Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004492.1 Kokia drynarioides strain JFW-HI SEQ_117925, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 949

Length: 1583
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.31


Found at i:469 original size:17 final size:17

Alignment explanation


    Indices: 447--480  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        437 CTAAGAATTT

                             
        447 AAAGAAAATAAATTTAA
          1 AAAGAAAATAAATTTAA

                   * *       
        464 AAAGAAACTCAATTTAA
          1 AAAGAAAATAAATTTAA

        481 GTATCAGCCT


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24


Consensus pattern (17 bp):   
AAAGAAAATAAATTTAA

Found at i:1334 original size:23 final size:23

Alignment explanation


    Indices: 1293--1347  Score: 65
    Period size: 23  Copynumber: 2.4  Consensus size: 23

       1283 CCATCCTTGT

                 *  *     *      * 
       1293 TGACTAGACCTTCTGGAAGCTGC
          1 TGACTGGATCTTCTAGAAGCTAC

               *                   
       1316 TGATTGGATCTTCTAGAAGCTAC
          1 TGACTGGATCTTCTAGAAGCTAC

                     
       1339 TGACTGGAT
          1 TGACTGGAT

       1348 GCCACGTCAG


Statistics
Matches: 26,  Mismatches: 6, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  23   26  1.00

ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31


Consensus pattern (23 bp):   
TGACTGGATCTTCTAGAAGCTAC
Done.