Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004495.1 Kokia drynarioides strain JFW-HI SEQ_117929, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3026
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.30


Found at i:866 original size:77 final size:79

Alignment explanation


    Indices: 774--938  Score: 298
    Period size: 77  Copynumber: 2.1  Consensus size: 79

        764 ATGCTTGTTA

                                                                             
        774 CACACAAAACAACTTTTAAATACCAAAAGTATCAAAGCACATGAG-TCTTAACACTCTCCTTATT
          1 CACACAAAACAACTTTTAAATACCAAAAGTATCAAAGCACATGAGTTCTTAACACTCTCCTTATT

                          
        838 CAAACACAAA-CCT
         66 CAAACACAAACCCT

                                                       *                     
        851 CACACAAAACAACTTTTAAATACCAAAAGTATCAAAGCACATGTGTTCTTAACACTCTCCTTATT
          1 CACACAAAACAACTTTTAAATACCAAAAGTATCAAAGCACATGAGTTCTTAACACTCTCCTTATT

                          
        916 CAAACACAAACCCT
         66 CAAACACAAACCCT

             *       
        930 CGCACAAAA
          1 CACACAAAA

        939 GCATACATTA


Statistics
Matches: 84,  Mismatches: 2, Indels: 2
        0.95            0.02        0.02

Matches are distributed among these distances:
  77   44  0.52
  78   29  0.35
  79   11  0.13

ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23


Consensus pattern (79 bp):   
CACACAAAACAACTTTTAAATACCAAAAGTATCAAAGCACATGAGTTCTTAACACTCTCCTTATT
CAAACACAAACCCT

Done.