genome.fa.s450.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01000450.1 Kokia drynarioides strain JFW-HI SEQ_111303, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58704

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14--48	11	3.2	11	87	0	52	54	2	0	42	1.15
21--80	16	3.6	17	80	10	79	56	1	0	41	1.09
12--80	34	2.0	35	91	5	113	53	2	0	43	1.15
955--1001	20	2.4	18	83	13	58	55	0	0	44	0.99
5645--5909	41	6.3	42	81	3	248	28	19	16	35	1.93
5645--5901	84	3.1	83	84	4	302	27	19	17	36	1.94
7691--7742	21	2.5	20	84	12	61	34	26	13	25	1.93
17054--17159	45	2.4	45	86	0	140	12	16	21	49	1.79
17141--17180	21	1.9	21	85	10	55	7	20	27	45	1.78
19257--19616	29	12.5	29	70	14	162	32	4	27	34	1.78
19437--19557	28	4.3	28	72	10	93	31	4	28	35	1.76
19483--19645	59	2.8	59	80	12	169	34	3	27	34	1.73
19522--19645	29	4.2	29	75	12	103	34	2	26	36	1.70
21436--21478	18	2.5	17	88	3	59	58	4	2	34	1.32
21843--23136	209	6.2	209	84	3	1378	22	22	18	36	1.95
21843--23136	419	3.1	414	82	4	1471	22	22	18	36	1.95
23212--23331	41	2.9	41	89	0	195	32	19	15	32	1.93
23591--23758	50	3.4	51	70	10	159	18	33	16	31	1.93
23577--23909	99	3.4	98	84	3	407	16	34	17	31	1.92
30550--30677	8	14.4	8	78	13	85	64	3	0	31	1.14
30553--30677	9	13.9	9	68	16	55	65	3	0	30	1.14
30615--30676	28	2.2	27	83	8	79	62	1	0	35	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30550--30792	19	13.1	18	72	19	130	61	2	1	34	1.18
30562--30790	28	8.4	27	66	22	70	61	3	1	34	1.20
30736--30792	10	6.0	9	82	13	62	64	1	1	31	1.13
30638--30790	9	15.8	10	69	23	73	58	2	1	37	1.20
31483--31514	9	3.4	10	87	12	50	34	0	0	65	0.93
31483--31527	17	2.6	19	80	16	53	33	2	0	64	1.06
31572--31698	19	6.5	19	73	15	89	33	4	6	55	1.46
35290--35439	50	3.0	50	97	0	273	31	18	18	31	1.95
40789--40849	18	3.5	17	73	8	52	49	3	1	45	1.28
42157--42214	12	4.7	12	78	14	64	0	29	3	67	1.07
42144--42582	96	4.6	98	84	9	579	4	33	2	59	1.34
42254--42306	12	4.2	12	75	13	52	0	33	3	62	1.13
42257--42399	43	3.5	40	69	17	112	3	32	4	60	1.33
42266--42523	87	2.9	87	91	5	399	4	33	3	58	1.34
42442--42495	12	4.2	12	73	13	54	0	31	3	64	1.11
42424--42486	27	2.3	28	86	8	85	3	33	3	60	1.28
42356--42615	96	2.7	96	86	3	238	4	33	3	59	1.32
42743--42901	66	2.4	64	78	11	162	6	31	2	59	1.35
42820--42865	23	2.0	23	86	0	65	2	30	0	67	1.03
46373--46411	14	2.7	15	84	8	62	58	5	5	30	1.41
48660--49263	29	20.6	28	75	13	454	34	3	27	34	1.76
48747--49269	59	8.9	59	86	4	671	34	3	27	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50216--50253	20	1.9	20	100	0	76	36	0	0	63	0.95
50216--50259	3	15.0	3	90	4	72	36	0	0	63	0.95
51010--51056	24	2.0	23	87	4	67	48	2	2	46	1.25
51023--51102	17	4.6	17	82	1	97	52	2	2	42	1.28
51020--51090	6	12.2	6	70	16	51	50	2	1	45	1.25
51418--51909	206	2.4	201	82	2	536	22	21	18	37	1.94
51730--52045	116	2.7	114	80	2	389	22	21	19	36	1.95

Tables:   1

The End!