Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004504.1 Kokia drynarioides strain JFW-HI SEQ_117945, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1676
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32


Found at i:141 original size:19 final size:19

Alignment explanation


    Indices: 117--162  Score: 83
    Period size: 19  Copynumber: 2.4  Consensus size: 19

        107 TTGGGGATCT

                               
        117 GTCAAAGGATGAAATGAAA
          1 GTCAAAGGATGAAATGAAA

                               
        136 GTCAAAGGATGAAATGAAA
          1 GTCAAAGGATGAAATGAAA

                    
        155 GTCTAAAG
          1 GTC-AAAG

        163 AGCAAAATAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  19   22  0.85
  20    4  0.15

ACGTcount: A:0.50, C:0.07, G:0.26, T:0.17


Consensus pattern (19 bp):   
GTCAAAGGATGAAATGAAA
Done.