Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004508.1 Kokia drynarioides strain JFW-HI SEQ_117951, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4933
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34

Warning! 35 characters in sequence are not A, C, G, or T


Found at i:2648 original size:21 final size:21

Alignment explanation


    Indices: 2622--2672  Score: 57
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       2612 AAATTTAGGG

                  *              
       2622 TTCGAAGTTCAAGATTCAAGA
          1 TTCGAAATTCAAGATTCAAGA

                      * *   *    
       2643 TTCGAAATTCTATATTTAAGA
          1 TTCGAAATTCAAGATTCAAGA

               *     
       2664 TTCAAAATT
          1 TTCGAAATT

       2673 TAAATTAAAA


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   25  1.00

ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37


Consensus pattern (21 bp):   
TTCGAAATTCAAGATTCAAGA
Done.