Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004509.1 Kokia drynarioides strain JFW-HI SEQ_117952, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5257
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32


Found at i:1487 original size:24 final size:24

Alignment explanation


    Indices: 1458--1505  Score: 62
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1448 TGTCATTGTA

                 *                    
       1458 ATTTTTCTGTTAATTT-TTGTCTTTT
          1 ATTTTACT-TTAATTTGTT-TCTTTT

                                   
       1483 ATTTTACTTTAATTTGTTTCTTT
          1 ATTTTACTTTAATTTGTTTCTTT

       1506 AGTTTTTGTA


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  24   12  0.57
  25    9  0.43

ACGTcount: A:0.15, C:0.08, G:0.06, T:0.71


Consensus pattern (24 bp):   
ATTTTACTTTAATTTGTTTCTTTT
Done.