genome.fa.s4511.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004511.1 Kokia drynarioides strain JFW-HI SEQ_117954, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13068

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56--245	62	3.0	61	83	3	182	38	15	17	27	1.91
403--587	62	3.0	62	86	2	264	39	16	18	25	1.91
1--863	340	2.5	339	85	2	1086	39	15	17	27	1.90
737--863	62	2.0	62	90	0	200	40	16	14	28	1.88
1014--1137	62	2.0	62	88	3	187	37	16	17	27	1.92
459--1912	278	5.2	278	73	10	1266	38	14	17	28	1.90
1082--1572	216	2.3	216	82	4	562	37	14	17	30	1.89
1507--1693	62	3.0	62	88	0	266	37	14	18	29	1.90
1298--1912	340	1.8	340	84	2	860	38	13	17	29	1.88
1632--2128	216	2.3	216	85	2	649	38	13	17	30	1.87
2065--2190	62	2.0	62	85	0	171	35	15	16	31	1.91
1848--2406	278	2.0	278	82	1	681	37	13	17	31	1.88
2126--3252	215	5.2	215	81	3	1219	38	14	17	29	1.89
2139--3269	431	2.6	430	81	2	1275	38	14	16	29	1.89
3221--3392	62	2.8	62	86	3	229	40	16	16	25	1.90
3545--3730	62	3.0	62	94	0	318	38	16	19	26	1.92
2998--3871	340	2.6	340	84	3	1125	39	15	18	27	1.90
3645--4094	223	2.0	224	85	3	611	38	15	16	29	1.89
4108--4297	62	3.0	62	83	5	204	38	16	16	27	1.90
3343--4514	564	2.1	564	84	4	1502	39	15	17	27	1.90
2774--4852	903	2.3	895	89	2	3186	39	15	17	27	1.90
4454--4638	62	3.0	62	86	2	273	38	16	18	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4796--4914	62	1.9	62	89	0	184	37	15	17	29	1.90
4514--5191	278	2.4	276	84	5	821	38	15	18	27	1.91
5065--5313	62	4.0	62	85	1	311	38	16	17	26	1.91
4788--5513	401	1.8	401	83	5	975	38	14	18	28	1.90
5252--6392	216	5.3	215	83	4	1265	39	14	17	28	1.88
5252--6392	431	2.6	428	82	4	1339	39	14	17	28	1.88
6327--6516	62	3.0	61	79	9	206	40	16	17	26	1.90
6666--6851	62	3.0	62	87	0	273	37	13	18	29	1.90
6123--7133	338	3.0	337	84	3	1237	39	14	18	27	1.90
7013--7133	62	2.0	62	89	0	188	38	15	19	26	1.91
7488--7614	62	2.0	62	86	0	173	36	15	16	31	1.90
7603--7661	30	2.1	27	87	12	84	38	16	8	35	1.80
7637--8339	216	3.3	213	80	7	753	39	14	16	29	1.88
8496--8595	40	2.5	40	91	1	166	25	5	16	54	1.62
8641--8703	32	2.0	32	87	0	90	33	9	17	39	1.82
11851--11935	11	7.7	11	67	19	52	70	1	23	4	1.13
11852--11920	20	3.3	20	76	11	68	71	1	21	5	1.16
11895--11947	13	3.7	14	80	10	54	67	1	26	3	1.17
11870--11935	30	2.3	26	78	14	69	71	1	24	3	1.09

Tables:   1

The End!