Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004512.1 Kokia drynarioides strain JFW-HI SEQ_117955, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 676

Length: 1128
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27


Found at i:621 original size:45 final size:45

Alignment explanation


    Indices: 559--736  Score: 248
    Period size: 45  Copynumber: 4.0  Consensus size: 45

        549 GCATAGCTCA

                                 * *         *           
        559 TCAAGCCAAGGATATCAGCCTTAGTTTGACGAGTCACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                                                         
        604 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                         *                             * 
        649 TCAAGCCAAGGATGTCAGCCTCAATTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

              *  **           *  * *            *      
        694 TCTAGGGAAGGATATCAGGCTGAGTTTGACGAGCCATCGCAAT
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAAT

        737 ACTCTATTCC


Statistics
Matches: 120,  Mismatches: 13, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  45  120  1.00

ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

Done.