Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004514.1 Kokia drynarioides strain JFW-HI SEQ_117957, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6816
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.29


Found at i:859 original size:35 final size:35

Alignment explanation


    Indices: 811--896  Score: 97
    Period size: 36  Copynumber: 2.4  Consensus size: 35

        801 TCATAGAAAC

                    *                             
        811 ATAAAATTGTATATATT-TTGAATTATT-TAT-ATTTT
          1 ATAAAATTATATATATTATT--ATT-TTGTATAATTTT

                                 *              
        846 ATAAAATTATATATAATTATTCTTTTGTATAATTTT
          1 ATAAAATTATATAT-ATTATTATTTTGTATAATTTT

                           
        882 ATAAAATTATATATA
          1 ATAAAATTATATATA

        897 AACACTCACA


Statistics
Matches: 45,  Mismatches: 2, Indels: 8
        0.82            0.04        0.15

Matches are distributed among these distances:
  34    2  0.04
  35   19  0.42
  36   22  0.49
  37    2  0.04

ACGTcount: A:0.42, C:0.01, G:0.03, T:0.53


Consensus pattern (35 bp):   
ATAAAATTATATATATTATTATTTTGTATAATTTT
Done.