Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004515.1 Kokia drynarioides strain JFW-HI SEQ_117958, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1672
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38


Found at i:256 original size:22 final size:22

Alignment explanation


    Indices: 231--275  Score: 72
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        221 GTTACTTTGA

                              *   
        231 TTTGTAATTATCTTATTTTATT
          1 TTTGTAATTATCTTATTTCATT

                 *                
        253 TTTGTGATTATCTTATTTCATT
          1 TTTGTAATTATCTTATTTCATT

             
        275 T
          1 T

        276 ATGGATTATT


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67


Consensus pattern (22 bp):   
TTTGTAATTATCTTATTTCATT

Found at i:284 original size:21 final size:22

Alignment explanation


    Indices: 237--284  Score: 71
    Period size: 22  Copynumber: 2.2  Consensus size: 22

        227 TTGATTTGTA

                        *    *    
        237 ATTATCTTATTTTATTTTTGTG
          1 ATTATCTTATTTCATTTATGTG

                                  
        259 ATTATCTTATTTCATTTATG-G
          1 ATTATCTTATTTCATTTATGTG

                 
        280 ATTAT
          1 ATTAT

        285 TATCATTTTC


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  21    6  0.25
  22   18  0.75

ACGTcount: A:0.23, C:0.06, G:0.08, T:0.62


Consensus pattern (22 bp):   
ATTATCTTATTTCATTTATGTG
Done.