Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004520.1 Kokia drynarioides strain JFW-HI SEQ_117964, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2033
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32


Found at i:429 original size:18 final size:18

Alignment explanation


    Indices: 364--430  Score: 55
    Period size: 18  Copynumber: 3.6  Consensus size: 18

        354 GTCGAAATAA

                            *  
        364 CTTTTTCTTC-CTCTTCTT
          1 CTTTTTCTTCTCT-TTTTT

                  *             *
        382 CTGTTTCCTTCTCTTCTCTTA
          1 CT-TTTTCTTCTCTT-T-TTT

                *             
        403 CTTTGTCTTCTCTTTTTT
          1 CTTTTTCTTCTCTTTTTT

                      
        421 CTTTTTCTTC
          1 CTTTTTCTTC

        431 AAGACCATCA


Statistics
Matches: 38,  Mismatches: 7, Indels: 8
        0.72            0.13        0.15

Matches are distributed among these distances:
  18   13  0.34
  19    9  0.24
  20   13  0.34
  21    3  0.08

ACGTcount: A:0.01, C:0.30, G:0.03, T:0.66


Consensus pattern (18 bp):   
CTTTTTCTTCTCTTTTTT
Done.