Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01004529.1 Kokia drynarioides strain JFW-HI SEQ_117978, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9232
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Found at i:383 original size:216 final size:217
Alignment explanation
Indices: 4--870 Score: 1139
Period size: 216 Copynumber: 4.0 Consensus size: 217
1 TCT
4 CGAGAATGGAATGTTC-AGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCT
1 CGAGAATGGAATGTTCGAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCT
** * *
68 AAGTTATTCAAGAACTCTTAAAACTTTGACAAGTTCGGAATTTCAGCCAAGATCCATGAGACAAA
66 AAGTTATAAAAGAACTCGTAAAACTTTGACAAGTTCGGAAGTTCAGCCAAGATCCATGAGACAAA
* * *
133 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTATTTACTAAATGAGAAAGTATT
131 CAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTATTTACTAAATGACAAACTATT
198 TAGACCAAATGATGCGATTTCC
196 TAGACCAAATGATGCGATTTCC
* * * * * * * *
220 CGGGCATGGAATGCTCGAG-AAATTTCTCAAAGGAATGGATCGTCTTGAATACATTAAGGAACCA
1 CGAGAATGGAATGTTCGAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCT
* * *
284 AAGTTACAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC-GACCAAGGA-CCTAT-AGAC
66 AAGTTATAAAAGAACTCGTAAAACTTTGACAAGTTCGGAAGTTCAG-CCAA-GATCC-ATGAGAC
* *
346 AAACAATTCTCACCTAAATAAATTTTTAATTCAAAGACAAAAAGTGT-TTTAC-AAGATAACAAA
128 AAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGT-TATTTACTAA-ATGACAAA
* *
409 CTATTTGGACCAAATGATGCGATTTCT
191 CTATTTAGACCAAATGATGCGATTTCC
* * * *
436 CGAGAATGGAATGTTCGA-AAAATTTCTCGAAGGAATGCATCATTTTGAATACTTTAAGTAACCT
1 CGAGAATGGAATGTTCGAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCT
* * ** * *
500 AAGTTATAAAAGAACTCGTAAAAGTTTTACCGGTTC-GAATGTTC-GTCCAAGAACCAGGAGACA
66 AAGTTATAAAAGAACTCGTAAAACTTTGACAAGTTCGGAA-GTTCAG-CCAAGATCCATGAGACA
* * * *
563 AACAATTCTCACCAAAACAAGTTTTTAATTCAAATACAAAAAGTTATTTACGAAATGACAAACTA
129 AACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTATTTACTAAATGACAAACT-
*
628 ATTT-GACCAAATGATGCGATTTCT
193 ATTTAGACCAAATGATGCGATTTCC
* *
652 CGAGAACGGAATGTTCG-GAAAATTGCTCGATGGAATGGATCATCTTGAATACTTTAAGGAACCT
1 CGAGAATGGAATGTTCGAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCT
** * * * *
716 AAGTTATTCAAGAACTCTTAAAACTTTGACAAGTTTGGAACTTCAGCCAAGATACATGAGACAAA
66 AAGTTATAAAAGAACTCGTAAAACTTTGACAAGTTCGGAAGTTCAGCCAAGATCCATGAGACAAA
* * *
781 CAATTCTCACGTAAATAAGTTTTTAATTCAAA-AAAAAAAGTTATTTACTAAATGAGAAACTATT
131 CAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTATTTACTAAATGACAAACTATT
845 TAGACCAAATGATGCGATTTCC
196 TAGACCAAATGATGCGATTTCC
867 CGAG
1 CGAG
871 CATTAAGGAA
Statistics
Matches: 566, Mismatches: 68, Indels: 35
0.85 0.10 0.05
Matches are distributed among these distances:
214 4 0.01
215 59 0.10
216 486 0.86
217 17 0.03
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (217 bp):
CGAGAATGGAATGTTCGAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCT
AAGTTATAAAAGAACTCGTAAAACTTTGACAAGTTCGGAAGTTCAGCCAAGATCCATGAGACAAA
CAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTATTTACTAAATGACAAACTATT
TAGACCAAATGATGCGATTTCC
Found at i:1250 original size:216 final size:215
Alignment explanation
Indices: 873--4370 Score: 3916
Period size: 216 Copynumber: 16.2 Consensus size: 215
863 TTCCCGAGCA
* * * * * *
873 TTAAGGAACCAAAGTTACAAAAGAAGTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGGAC
1 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGATGTTCGA-CAAGAAC
* * * * *
938 CAATAGACAAACAATTATCACCTAAATAAGTTTTAAATTCATAA-ACAAAAAGTGGTTTATAAAA
65 CAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCA-AAGACAAAAAGTTGTTTACAAAA
* * * *
1002 TGACAAACTATTTGGACCAAATGATACGATTTCCCGAGAATGGAATGTTCGAAAAATTTCTCGAA
129 TGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * *
1067 GGAATGCATCATTTTGAATACT
194 GGAATGGATCGTCTTGAATACT
* * * *
1089 TTAAGGAACCTAAGTTATAAAAGAAGTCGTAAAAGTTTTACCAGTTCGGATGTTCGTAGAAGAAC
1 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGATGTTCG-ACAAGAAC
*
1154 CAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTGAAAGACAAAAAGTTGTTTACAAAAT
65 CAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAAT
* * * ** ** * *
1219 GACAAACTAATTGGTCCAAATGATGCGATTTCACGAGTTTCAAATTTTC-AGAAAATTGCTCGTA
130 GACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAAATTGCTCGAA
* *
1283 GGAATAGATCATCTTGAATACT
194 GGAATGGATCGTCTTGAATACT
* * * * * *
1305 TTAAGGAACCTAAGTAATAAAAGAACTCGTAAAAGTTTTACCAGTTCTGAGGTTCGTCCAAGAAC
1 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGATGTTCG-ACAAGAAC
* * *
1370 CAAGAGAAAAACAATTCTCACCAAAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTACAAAAT
65 CAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAAT
* * * * * *
1435 GACAAACTAATTGGACCAAATGAGGCGATTTCTTGAGCGTGGAATTTTCGAAAAATTGCTCAAAG
130 GACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
1500 GAATGGATCGTCTTGAATACT
195 GAATGGATCGTCTTGAATACT
** * * * * ** *
1521 TTAAGGAACCTAAGTTATTCAAGAACTCTTAAAACTTTGGCATGTTCAAAAT-TTCAGCCAAGAA
1 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GGATGTTC-GACAAGAA
* * *
1585 CCATGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACTAAA
64 CCAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAA
* * * * * *
1650 TGAGAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGCTC-AAGAAATTTCTCAA
129 TGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAA-AAATTGCTCGA
*
1714 AGGAATGGATCGTCTTGAATACA
193 AGGAATGGATCGTCTTGAATACT
* * * * * * * *
1737 TTAAGGAGCCAAAGTTACAGAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGATCGACCAAGGAC
1 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGATGTTCGA-CAAGAAC
* * *
1802 CCATAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCATAA-ACAAAAAGTGGTTTACAAAA
65 CAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCA-AAGACAAAAAGTTGTTTACAAAA
* * * * * * *
1866 TGACAAACTATTTGGACCAAATGATACGATTTCCCGAGAATGTAATGTTCGAAAATTTTCTTGAA
129 TGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* *
1931 GGAATGCATCGT-TCTGAATACG
194 GGAATGGATCGTCT-TGAATACT
* * * * * *
1953 TTAACGAACCTAAGTTATAAAAGAACTTGTAACAGTTTTACCAGTTCGGATGTTCGTCGAAGAAC
1 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGATGTTCGAC-AAGAAC
2018 CAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAAT
65 CAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAAT
* * * * * * * **
2083 GACAAACTAATTGGTCCAAATGATGCAATTTCTCTAGCTTTGAATTTTTAAAAAATTGCTCGAAG
130 GACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
*
2148 GAATAGATCGTCTTGAATACT
195 GAATGGATCGTCTTGAATACT
* * ** * *
2169 TTAAGGAACCTAAGTTATAAAAGAACTTGTAAAAGTTTTACCGGTTCGAATGTTCGTCAAAGAAC
1 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGATGTTCGAC-AAGAAC
* * * *
2234 TAAGAGACAAACAATTCTTACCAAAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTACAAAAT
65 CAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAAT
* * ** * *
2299 GACAAACTAATTGGACCAAGTGATGCGATTTCTCGAG-ACTGGAACATTCGGAAAATTGCTCAAA
130 GACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCA-TGGAATGTTCGAAAAATTGCTCGAA
2363 GGAATGGATCGTCTTGAATACT
194 GGAATGGATCGTCTTGAATACT
** * * * * *
2385 TTAAGGAACCTAA-TTATTTAAGAACTCGTAAAACTTTGACAAGTTCGAAAGTTCAGCCAAGGAC
1 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGATGTTC-GACAAGAAC
* * *
2449 CATGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCACAGACAAAAAGTTGTTTACAAAAT
65 CAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAAT
* * * *
2514 GACAAACTATTTAGACCAAATGACGCGATTTCTCGAGCATGGAATGTTC-AGGAAATTCCTCGAA
130 GACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAAATTGCTCGAA
*
2578 GGAATGGATCATCTTGAATACT
194 GGAATGGATCGTCTTGAATACT
* * * * * * * * *
2600 TTAAGGAACCGAACTTATACAAGAACTCGTAAAAGTTTGAAAAGTTCGTAAGTTCGGCCATGTAC
1 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGATGTTC-GACAAGAAC
* * * *
2665 TAATAGACAAACAATTCTCACCAAAATAAGATTTTAATTCAAAGAC-AAAAGTTGTTTACAAAAT
65 CAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAAT
* * * *
2729 GACAAACTAATTGGACCAAATGATACGATTTCTCGAGCGTGGAATGTT-TAGAAAATTGCTCGAA
130 GACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAAATTGCTCGAA
*
2793 GGAATGGATCGTGTTGAATA--
194 GGAATGGATCGTCTTGAATACT
* * * * * *
2813 -TAA-GAAGCTGAAGTTATAAAAGCACTCGTAAGACTTTGACATGTTCGGAAT-TTCAGCCAAGA
1 TTAAGGAACCT-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG-ATGTTC-GACAAGA
** * * *
2875 ACCATCAGACAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACAAAAAGCTGTTTACAAA
63 ACCAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAA
* * * * * * * *
2940 ATGAGAAACTATTTAGACCAAATTATGCGATTCCCCGAGCATTGAATGTTC-AAGAAATTCCTTG
128 ATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAA-AAATTGCTCG
*
3004 AAGGAATGGATCATCTTGAATACT
192 AAGGAATGGATCGTCTTGAATACT
* ** * * * * *
3028 TTAAGGAACCGAACATATAAAAGAACTCCTAAACGTTTGACAAGTTCAGAAGTTCGATCAAGGAC
1 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGATGTTCGA-CAAGAAC
* * *
3093 CAATAGACAAACAATTCTCACCAAAATAAGTTTTAAATTCAAAGACAAAAAG-TGTTTTACAAAA
65 CAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAA
** *
3157 TGACAAACTATTTGGACCAAATGATGCGATTTCTCGAAAATGGAATGTTCGAAAAATTTCTCGAA
129 TGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * *
3222 TGAATGAATCGTTTTGAATTCT
194 GGAATGGATCGTCTTGAATACT
* * * ** **
3244 TTAAGGAACTTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCAAATGTTCTTCAAAGAAC
1 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGATGTTCGAC-AAGAAC
* *
3309 CAAGAGACAAACAATTCTCACCAAAATAAGTTTTTTACTTCAAAGAC-AAAAGTTGTTTACAAAA
65 CAAGAGACAAACAATTCTCACCTAAATAAG-TTTTTAATTCAAAGACAAAAAGTTGTTTACAAAA
* * *
3373 TGACAAACTAATTGGACCAAATGATACGATTTCTCGAGCATGGAATGTT-TAGAAAATTGCTCGA
129 TGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAAATTGCTCGA
*
3437 AGGAATGGATCGTGTTGAATACT
193 AGGAATGGATCGTCTTGAATACT
*** * * * * * *
3460 TTAAGGAATAGAAGTTATAAAAGCACTCGTAAAAATTTGACAAGTTCGAAATTTTTGCCAAGAAC
1 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-GATGTTCGACAAGAAC
* * * *
3525 CATGAGACAAACAATTCTTACGTAAAAAAGTTTTTAACTT-AAAGACAAAAAGTTGTTTACAAAA
65 CAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAA-TTCAAAGACAAAAAGTTGTTTACAAAA
* * * * * * * *
3589 TGAGAAACTATTTAGTCCAAATTATGCGATTTCCCGAGCATTGAATGTTC-AGGAAATTCCTCGA
129 TGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAAATTGCTCGA
* *
3653 AGGAATGGATCATCTTGAATGCT
193 AGGAATGGATCGTCTTGAATACT
* ** * * * * * *
3676 TTAAGGAACCGAACATATAAAAGAACTCCTATATGTTTGACAAGTTCAGAAGTTCGATCAAGGAC
1 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGATGTTCGA-CAAGAAC
* * *
3741 CAATAGTCAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAG-TGTTTTACAAAA
65 CAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAA
* * * *
3805 TAACAAACTATTTGGACCAAATGATGCAATTTCTCGAGAATGGAATGTTCGAAAAATTTCTCGAA
129 TGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * *
3870 GGAATGCATCGTTTTGAATAAT
194 GGAATGGATCGTCTTGAATACT
* **
3892 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAA-TTCGGATGTTCTTCAAAGAA
1 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGATGTTCGAC-AAGAA
* *
3956 CCAAGAGACAAACAATTCTCACCAAAATAAGTTTTTTAATTCAAATACAAAAAGTTGTTTACAAA
64 CCAAGAGACAAACAATTCTCACCTAAATAAG-TTTTTAATTCAAAGACAAAAAGTTGTTTACAAA
* * * * * *
4021 ATGACAATCTAATTGGACCAAATTATACGATTTCTCGAGCGTGGAAT-TTACAAAAAATTGCTCG
128 ATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTT-CGAAAAATTGCTCG
* *
4085 AAGGAAAGGATCATCTTGAATACT
192 AAGGAATGGATCGTCTTGAATACT
** * * * * *
4109 TTAAGGAACCTAAGTTATTCAATAACTCTTAAAACTTTGACAAGTTCGAAAT-TTCAGCCAAGAA
1 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-GATGTTC-GACAAGAA
* * *
4173 CCATGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACCAAA
64 CCAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAA
* * * * * * * * *
4238 TGAGAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAGAATGCTCGAGAAATTTCTCAAA
129 TGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* *
4303 GGAATTGATCGTCTTGAATACA
194 GGAATGGATCGTCTTGAATACT
* ** *
4325 TTAAGGAACCAAAGTTACGAATGAACTCGTAAAAGTTTGACAAGTT
1 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
4371 ACAAAATGAC
Statistics
Matches: 2769, Mismatches: 458, Indels: 110
0.83 0.14 0.03
Matches are distributed among these distances:
211 4 0.00
212 83 0.03
213 86 0.03
215 311 0.11
216 2065 0.75
217 215 0.08
218 5 0.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (215 bp):
TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGATGTTCGACAAGAACC
AAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATG
ACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGG
AATGGATCGTCTTGAATACT
Found at i:1411 original size:600 final size:595
Alignment explanation
Indices: 271--2114 Score: 2027
Period size: 600 Copynumber: 3.0 Consensus size: 595
261 GTCTTGAATA
*
271 CATTAAGGAACCAAAGTTACAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGG
1 CATTAAGGAACCAAAGTTACAAAAGAAGTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGG
* * * *
336 ACCTATAGACAAACAATTCTCACCTAAATAAATTTTTAATTCAAAGACAAAAAGTGTTTTACAAG
66 ACC-ATAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTGGTTTATAAA
* *
401 ATAACAAACTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTTCTCGA
130 ATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTTCTCGA
*
466 AGGAATGCATCATTTTGAATACTTTAAGTAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACC
195 AGGAATGCATCATTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACC
* * * * * *
531 GGTTCGAATGTTCGTCCAAGAACCAGGAGACAAACAATTCTCACCAAAACAAGTTTTTAATTCAA
260 AGTTCGGATGTTCGTACAAGAACCAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
* * * * * *
596 ATACAAAAAGTTATTTACGAAATGACAAACTAATTTGACCAAATGATGCGATTTCTCGAGAACGG
325 A-ACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCACGAGATC-A
**
661 AATGTTCGGAAAATTGCTCGATGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATTCA
388 AATGTTC-GAAAATTGCTCGA-GGAAT-GATCATCTTGAATACTTTAAGGAACCTAAGTTATAAA
* * * * * *
726 AGAACTCTTAAAACTTTGACAAGTT-TGGAACTTCAG-CCAAGATA-CATGAGACAAACAATTCT
450 AGAACTCGTAAAAGTTTTACCAGTTCT-GAAGTTC-GTCCAAGA-ACCAAGAGACAAACAATTCT
* * * * * * *
788 CACGTAAATAAGTTTTTAATTCAAA-AAAAAAAGTTATTTACTAAATGAGAAACTATTTAGACCA
512 CACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCA
852 AATGATGCGATTTCCCGAG
577 AATGATGCGATTTCCCGAG
871 CATTAAGGAACCAAAGTTACAAAAGAAGTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGG
1 CATTAAGGAACCAAAGTTACAAAAGAAGTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGG
* *
936 ACCAATAGACAAACAATTATCACCTAAATAAGTTTTAAATTCATAA-ACAAAAAGTGGTTTATAA
66 ACC-ATAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCA-AAGACAAAAAGTGGTTTATAA
*
1000 AATGACAAACTATTTGGACCAAATGATACGATTTCCCGAGAATGGAATGTTCGAAAAATTTCTCG
129 AATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTTCTCG
*
1065 AAGGAATGCATCATTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAGTCGTAAAAGTTTTAC
194 AAGGAATGCATCATTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTAC
* *
1130 CAGTTCGGATGTTCGTAGAAGAACCAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTGA
259 CAGTTCGGATGTTCGTACAAGAACCAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCA
* *
1195 AAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGTCCAAATGATGCGATTTCACGAGTTTC
324 AA-ACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCACGAG-ATC
* *
1260 AAATTTTCAGAAAATTGCTCGTAGGAATAGATCATCTTGAATACTTTAAGGAACCTAAGTAATAA
387 AAATGTTC-GAAAATTGCTCG-AGGAAT-GATCATCTTGAATACTTTAAGGAACCTAAGTTATAA
* *
1325 AAGAACTCGTAAAAGTTTTACCAGTTCTGAGGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCA
449 AAGAACTCGTAAAAGTTTTACCAGTTCTGAAGTTCGTCCAAGAACCAAGAGACAAACAATTCTCA
* *
1390 CCAAAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAA
514 CCTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAA
* **
1455 TGAGGCGATTTCTTGAG
579 TGATGCGATTTCCCGAG
* *
1472 CGTGGAATTTTCGAA-AAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGT
1 C-----A--TT--AAGGAA---C-C-----AA---A--G---T---TAC---AA--AA--GAAG-
* * * * * *
1536 TATTCAAGAACTCTTAAAACTTTGGCATGTTCAAAATTTC-AGCCAAGAACCATGAGACAAACAA
29 ---TC--G------TAAAAGTTTGACAAGTTCAGAAGTTCGA-CCAAGGACCAT-AGACAAACAA
* * * *
1600 TTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACT-AAATGAGAAACTATTTA
81 TTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTGGTTTA-TAAAATGACAAACTATTTG
* * * * * *
1664 GACCAAATGATGCGATTTCCCGAGCATGGAATGCTC-AAGAAATTTCTCAAAGGAATGGATCGTC
145 GACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAA-AAATTTCTCGAAGGAATGCATCATT
* * * * * * * * * *
1728 TTGAATACATTAAGGAGCCAAAGTTACAGAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGATCG
209 TTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCGGATGTTCG
* * * *
1793 -ACCAAGGACCCATAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCATAAACAAAAAGTGG
274 TA-CAAGAACCAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCA-AAACAAAAAGTTG
* * * **
1857 TTTACAAAATGACAAACTATTTGGACCAAATGATACGATTTCCCGAGAATGTAATGTTCGAAAAT
337 TTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCACGAG-ATCAAATGTTCGAAAA-
* * * * * * *
1922 TTTCTTGAAGGAATGCATCGT-TCTGAATACGTTAACGAACCTAAGTTATAAAAGAACTTGTAAC
400 TTGCTCG-AGGAATG-ATCATCT-TGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAA
* * *
1986 AGTTTTACCAGTTCGGATGTTCGTCGAAGAACCAAGAGACAAACAATTCTCACCTAAATAAGTTT
462 AGTTTTACCAGTTCTGAAGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCTAAATAAGTTT
* *
2051 TTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGTCCAAATGATGCAATTTC
527 TTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTC
2115 TCTAGCTTTG
Statistics
Matches: 1059, Mismatches: 120, Indels: 82
0.84 0.10 0.07
Matches are distributed among these distances:
599 2 0.00
600 483 0.46
601 55 0.05
606 1 0.00
608 2 0.00
609 2 0.00
610 2 0.00
612 1 0.00
613 1 0.00
618 2 0.00
621 1 0.00
623 1 0.00
626 1 0.00
629 3 0.00
632 2 0.00
634 2 0.00
636 3 0.00
640 2 0.00
642 1 0.00
647 15 0.01
648 474 0.45
649 3 0.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (595 bp):
CATTAAGGAACCAAAGTTACAAAAGAAGTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGG
ACCATAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTGGTTTATAAAA
TGACAAACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTTCTCGAA
GGAATGCATCATTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCA
GTTCGGATGTTCGTACAAGAACCAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA
ACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCACGAGATCAAAT
GTTCGAAAATTGCTCGAGGAATGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACT
CGTAAAAGTTTTACCAGTTCTGAAGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCTAAAT
AAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCG
ATTTCCCGAG
Found at i:2130 original size:648 final size:647
Alignment explanation
Indices: 873--4370 Score: 4500
Period size: 648 Copynumber: 5.4 Consensus size: 647
863 TTCCCGAGCA
* * * * * * *
873 TTAAGGAACCAAAGTTACAAAAGAAGTCGTAAAAGTTTGACAAGTTC-AGAAGTTC-GACCAAGG
1 TTAAGGAACCTAAGTTATAAAAGAACTCTTAAAACTTTGACAAGTTCGA-AATTTCAG-CCAAGA
* * * * *
936 ACCAAT-AGACAAACAATTATCACCTAAATAAGTTTTAAATTCATAA-ACAAAAAGTGGTTTATA
64 ACC-ATGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCA-AAGACAAAAAGTTGTTTACA
* * * *
999 AAATGACAAACTATTTGGACCAAATGATACGATTTCCCGAGAATGGAATGTTCGAA-AAATTTCT
127 AAATGAGAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AAGAAATTTCT
* * * * * *
1063 CGAAGGAATGCATCATTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAGTCGTAAAAGTTTT
191 CAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * * * *
1128 ACCAGTTCGGATGTTCGTA-GAAGAACCAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAAT
256 ACAAGTTCAGAAGTTCG-ACCAAGGACCAATAGACAAACAATTCTCACCTAAATAAGTTTTTAAT
* * * * * *
1192 TGAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGTCCAAATGATGCGATTTCACGAGT
320 TCAAAGACAAAAAGTGGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGA
* ** * * * *
1257 TTCAAATTTTCAGAAAATTGCTCGTAGGAATAG-ATC-ATCTTGAATACTTTAAGGAACCTAAGT
385 ATGGAATGTTC-GAAAATTTCTCGAAGGAAT-GCATCGTTC-TGAATACTTTAAGGAACCTAAGT
* * * * *
1320 AATAAAAGAACTCGTAAAAGTTTTACCAGTTCTGAGGTTCGTCCAAGAACCAAGAGAAAAACAAT
447 TATAAAAGAACTCGTAAAAGTTTTACCAGTTCGGATGTTCGTCAAAGAACCAAGAGACAAACAAT
*
1385 TCTCACCAAAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTACAAAATGACAAACTAATTGGA
512 TCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGA
** * * *
1450 CCAAATGAGGCGATTTCTTGAGCGTGGAATTTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTG
577 CCAAATGATACGATTTCTCGAGCGTGGAATTTTAGAAAAATTGCTCGAAGGAATGGATCGTCTTG
1515 AATACT
642 AATACT
** * * *
1521 TTAAGGAACCTAAGTTATTCAAGAACTCTTAAAACTTTGGCATGTTCAAAATTTCAGCCAAGAAC
1 TTAAGGAACCTAAGTTATAAAAGAACTCTTAAAACTTTGACAAGTTCGAAATTTCAGCCAAGAAC
*
1586 CATGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACTAAAT
66 CATGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAAT
*
1651 GAGAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGCTCAAGAAATTTCTCAAAG
131 GAGAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAGAAATTTCTCAAAG
* * * * *
1716 GAATGGATCGTCTTGAATACATTAAGGAGCCAAAGTTACAGAAGAACTCGTAAAAGTTTGACAAG
196 GAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* *
1781 TTCAGAAGATCGACCAAGGACCCATAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCATAA
261 TTCAGAAGTTCGACCAAGGACCAATAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCA-AA
* * *
1846 -ACAAAAAGTGGTTTACAAAATGACAAACTATTTGGACCAAATGATACGATTTCCCGAGAATGTA
325 GACAAAAAGTGGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGAATGGA
* * *
1910 ATGTTCGAAAATTTTCTTGAAGGAATGCATCGTTCTGAATACGTTAACGAACCTAAGTTATAAAA
390 ATGTTCGAAAA-TTTCTCGAAGGAATGCATCGTTCTGAATACTTTAAGGAACCTAAGTTATAAAA
* * *
1975 GAACTTGTAACAGTTTTACCAGTTCGGATGTTCGTCGAAGAACCAAGAGACAAACAATTCTCACC
454 GAACTCGTAAAAGTTTTACCAGTTCGGATGTTCGTCAAAGAACCAAGAGACAAACAATTCTCACC
* *
2040 TAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGTCCAAATG
519 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATG
* * * * * *
2105 ATGCAATTTCTCTAGCTTTGAATTTTTA-AAAAATTGCTCGAAGGAATAGATCGTCTTGAATACT
584 ATACGATTTCTCGAGCGTGGAA-TTTTAGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* * ** *
2169 TTAAGGAACCTAAGTTATAAAAGAACT-TGTAAAAGTTTTACCGGTTCG-AATGTTC-GTCAAAG
1 TTAAGGAACCTAAGTTATAAAAGAACTCT-TAAAACTTTGACAAGTTCGAAAT-TTCAG-CCAAG
* * * ** *
2231 AACTAAGAGACAAACAATTCTTACCAAAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTACAA
63 AACCATGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAA
* * * * * ** * *
2296 AATGACAAACTAATTGGACCAAGTGATGCGATTTCTCGAG-ACTGGAACATTC-GGAAAATTGCT
128 AATGAGAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA-TGGAATGTTCAAG-AAATTTCT
* * ** *
2359 CAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAA-TTATTTAAGAACTCGTAAAACTTTG
191 CAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG
*
2423 ACAAGTTC-GAAAGTTC-AGCCAAGGACC-ATGAGACAAACAATTCTCACGTAAATAAGTTTTTA
256 ACAAGTTCAG-AAGTTCGA-CCAAGGACCAAT-AGACAAACAATTCTCACCTAAATAAGTTTTTA
* * * *
2485 ATTCACAGACAAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGACGCGATTTCTCGA
318 ATTCAAAGACAAAAAGTGGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGA
* * * * * * *
2550 GCATGGAATGTTCAGGAAATTCCTCGAAGGAATGGATC-ATCTTGAATACTTTAAGGAACCGAAC
383 GAATGGAATGTTC-GAAAATTTCTCGAAGGAATGCATCGTTC-TGAATACTTTAAGGAACCTAAG
* * ** * * * * * * * *
2614 TTATACAAGAACTCGTAAAAGTTTGAAAAGTTCGTAAGTTCGGCCATGTACTAATAGACAAACAA
446 TTATAAAAGAACTCGTAAAAGTTTTACCAGTTCGGATGTTCGTCAAAGAACCAAGAGACAAACAA
*
2679 TTCTCACCAAAATAAGATTTTAATTCAAAGAC-AAAAGTTGTTTACAAAATGACAAACTAATTGG
511 TTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGG
*
2743 ACCAAATGATACGATTTCTCGAGCGTGGAATGTTTAG-AAAATTGCTCGAAGGAATGGATCGTGT
576 ACCAAATGATACGATTTCTCGAGCGTGGAAT-TTTAGAAAAATTGCTCGAAGGAATGGATCGTCT
2807 TGAATA--
640 TGAATACT
* * * * * *
2813 -TAA-GAAGCTGAAGTTATAAAAGCACTCGTAAGACTTTGACATGTTCGGAATTTCAGCCAAGAA
1 TTAAGGAACCT-AAGTTATAAAAGAACTCTTAAAACTTTGACAAGTTCGAAATTTCAGCCAAGAA
* * *
2876 CCATCAGACAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACAAAAAGCTGTTTACAAAA
65 CCATGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAA
* * * * **
2941 TGAGAAACTATTTAGACCAAATTATGCGATTCCCCGAGCATTGAATGTTCAAGAAATTCCTTGAA
130 TGAGAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAGAAATTTCTCAAA
* ** * *
3006 GGAATGGATCATCTTGAATACTTTAAGGAACCGAACATATAAAAGAACTCCTAAACGTTTGACAA
195 GGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * *
3071 GTTCAGAAGTTCGATCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTAAATTCAAA
260 GTTCAGAAGTTCGACCAAGGACCAATAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA
* *
3136 GACAAAAAGTGTTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAAAATGGA
325 GACAAAAAGTGGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGAATGGA
* * * * *
3201 ATGTTCGAAAAATTTCTCGAATGAATGAATCGTTTTGAATTCTTTAAGGAACTTAAGTTATAAAA
390 ATGTTCG-AAAATTTCTCGAAGGAATGCATCGTTCTGAATACTTTAAGGAACCTAAGTTATAAAA
** *
3266 GAACTCGTAAAAGTTTTACCAGTTCAAATGTTCTTCAAAGAACCAAGAGACAAACAATTCTCACC
454 GAACTCGTAAAAGTTTTACCAGTTCGGATGTTCGTCAAAGAACCAAGAGACAAACAATTCTCACC
*
3331 AAAATAAGTTTTTTACTTCAAAGAC-AAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAAT
519 AAAATAAG-TTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAAT
* *
3395 GATACGATTTCTCGAGCATGGAATGTTTAG-AAAATTGCTCGAAGGAATGGATCGTGTTGAATAC
583 GATACGATTTCTCGAGCGTGGAAT-TTTAGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
3459 T
647 T
*** * * * **
3460 TTAAGGAATAGAAGTTATAAAAGCACTCGTAAAAATTTGACAAGTTCGAAATTTTTGCCAAGAAC
1 TTAAGGAACCTAAGTTATAAAAGAACTCTTAAAACTTTGACAAGTTCGAAATTTCAGCCAAGAAC
* *
3525 CATGAGACAAACAATTCTTACGTAAAAAAGTTTTTAACTT-AAAGACAAAAAGTTGTTTACAAAA
66 CATGAGACAAACAATTCTCACGTAAATAAGTTTTTAA-TTCAAAGACAAAAAGTTGTTTACAAAA
* * * * * *
3589 TGAGAAACTATTTAGTCCAAATTATGCGATTTCCCGAGCATTGAATGTTCAGGAAATTCCTCGAA
130 TGAGAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAGAAATTTCTCAAA
* * ** * * *
3654 GGAATGGATCATCTTGAATGCTTTAAGGAACCGAACATATAAAAGAACTCCTATATGTTTGACAA
195 GGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * *
3719 GTTCAGAAGTTCGATCAAGGACCAATAGTCAAACAATTCTCACCAAAATAAGTTTTTAATTCAAA
260 GTTCAGAAGTTCGACCAAGGACCAATAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAA
* * *
3784 GACAAAAAGTGTTTTACAAAATAACAAACTATTTGGACCAAATGATGCAATTTCTCGAGAATGGA
325 GACAAAAAGTGGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGAATGGA
* *
3849 ATGTTCGAAAAATTTCTCGAAGGAATGCATCGTTTTGAATAATTTAAGGAACCTAAGTTATAAAA
390 ATGTTCG-AAAATTTCTCGAAGGAATGCATCGTTCTGAATACTTTAAGGAACCTAAGTTATAAAA
* *
3914 GAACTCGTAAAAGTTTTACCAATTCGGATGTTCTTCAAAGAACCAAGAGACAAACAATTCTCACC
454 GAACTCGTAAAAGTTTTACCAGTTCGGATGTTCGTCAAAGAACCAAGAGACAAACAATTCTCACC
* *
3979 AAAATAAGTTTTTTAATTCAAATACAAAAAGTTGTTTACAAAATGACAATCTAATTGGACCAAAT
519 AAAATAAG-TTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAAT
* * * *
4044 TATACGATTTCTCGAGCGTGGAA-TTTACAAAAAATTGCTCGAAGGAAAGGATCATCTTGAATAC
583 GATACGATTTCTCGAGCGTGGAATTTTA-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
4108 T
647 T
** *
4109 TTAAGGAACCTAAGTTATTCAATAACTCTTAAAACTTTGACAAGTTCGAAATTTCAGCCAAGAAC
1 TTAAGGAACCTAAGTTATAAAAGAACTCTTAAAACTTTGACAAGTTCGAAATTTCAGCCAAGAAC
*
4174 CATGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACCAAAT
66 CATGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAAT
* * * *
4239 GAGAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAGAATGCTCGAGAAATTTCTCAAAG
131 GAGAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAGAAATTTCTCAAAG
* * * ** *
4304 GAATTGATCGTCTTGAATACATTAAGGAACCAAAGTTACGAATGAACTCGTAAAAGTTTGACAAG
196 GAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
4369 TT
261 TT
4371 ACAAAATGAC
Statistics
Matches: 2495, Mismatches: 309, Indels: 91
0.86 0.11 0.03
Matches are distributed among these distances:
642 5 0.00
643 178 0.07
644 251 0.10
645 121 0.05
646 98 0.04
647 281 0.11
648 1232 0.49
649 329 0.13
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (647 bp):
TTAAGGAACCTAAGTTATAAAAGAACTCTTAAAACTTTGACAAGTTCGAAATTTCAGCCAAGAAC
CATGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAAT
GAGAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAGAAATTTCTCAAAG
GAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
TTCAGAAGTTCGACCAAGGACCAATAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAG
ACAAAAAGTGGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGAATGGAA
TGTTCGAAAATTTCTCGAAGGAATGCATCGTTCTGAATACTTTAAGGAACCTAAGTTATAAAAGA
ACTCGTAAAAGTTTTACCAGTTCGGATGTTCGTCAAAGAACCAAGAGACAAACAATTCTCACCAA
AATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGAT
ACGATTTCTCGAGCGTGGAATTTTAGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
Found at i:4490 original size:139 final size:139
Alignment explanation
Indices: 4252--4509 Score: 351
Period size: 139 Copynumber: 1.9 Consensus size: 139
4242 AAACTATTTA
* * *
4252 GACCAAATGATGCAATTTCCCGAGCATAGAATGCTCGAGAAATTTCTCAAAGGAATTGATCGTCT
1 GACCAAATGATGCAATTTCCCGAGCATAGAATGCTCGAAAAATTGCTCAAAGGAATGGATCGTCT
*
4317 TGAATACATTAAGGAACCAAAGTTACGAATGAACTCGTAAAAGTTTGACAAGTTACAAAATGACA
66 TGAATACATTAAGGAACCAAAGTTACGAATGAACTCGTAAAACTTTGACAAGTTACAAAATGACA
4382 TACTAATTG
131 TACTAATTG
* * * * *
4391 GACCAAATGGTGCGATTTCTCGAGCATGGAATG-TCCGAAAAATTGCTCGAAGGAATGGATCGTC
1 GACCAAATGATGCAATTTCCCGAGCATAGAATGCT-CGAAAAATTGCTCAAAGGAATGGATCGTC
* * * *
4455 TTGAATACTTTAAGGAACCTATGTTATTC-AA-GAACTTGTAAAACTTTGACAAGTT
65 TTGAATACATTAAGGAACCAAAGTTA--CGAATGAACTCGTAAAACTTTGACAAGTT
4510 CGGAAGTTCA
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
138 1 0.01
139 99 0.96
140 2 0.02
141 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (139 bp):
GACCAAATGATGCAATTTCCCGAGCATAGAATGCTCGAAAAATTGCTCAAAGGAATGGATCGTCT
TGAATACATTAAGGAACCAAAGTTACGAATGAACTCGTAAAACTTTGACAAGTTACAAAATGACA
TACTAATTG
Found at i:5240 original size:216 final size:216
Alignment explanation
Indices: 4369--6555 Score: 2552
Period size: 216 Copynumber: 10.1 Consensus size: 216
4359 GTTTGACAAG
* * * *
4369 TTACAAAATGACATACTAATTGGACCAAATGGTGCGATTTCTCGAGCATGGAATGTCCGAAAAAT
1 TTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
* * ** * *
4434 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTATGTTATTCAAGAACTTGTAAAAC
66 TGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAG
*
4499 TTTGACAAGTTCGGAAGTTCAG-CCAAGGACC-ATGAGACAAACAATTCTCACCTAAATAAGTTT
131 TTTGACAAGTTCGGAAGTTC-GTCCAAGAACCAAT-AGACAAACAATTCTCACCTAAATAAGTTT
4562 TTAATTCAAAGACAAAAAGTTGT
194 TTAATTCAAAGACAAAAAGTTGT
* * * * **
4585 TTACAAAATGAGAAACTATTTAGACCAAATGATGCGATTTCTGGAGCATGGAATGGTCGGGAAAT
1 TTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
* * * * * *
4650 TCCTCAAAGTAAGGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAATAACTCGTAAAAG
66 TGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAG
* * * *
4715 TTTGAC-AGTTCGAAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTT
131 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACAAACAATTCTCACCTAAATAAGTTTTT
* *
4779 AATTTAAAGAAAAAAAG-TGTT
196 AATTCAAAGACAAAAAGTTG-T
* * * *
4800 TTA-AAGAATGACAAACTATTTGGACCAAATGATACGATTTCCCGAGAATGG-ATGTT-TAGAAA
1 TTACAA-AATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAA
* * * *
4862 ATTTCTCAAAGGAATGCATCATTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAA
64 ATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAA
* * * * * *
4927 A-TTTTACCAGTTC-GAATATTCATCCAAGAACCAAGAGACAAACAATTCTCACCTAAATAACTT
129 AGTTTGACAAGTTCGGAA-GTTCGTCCAAGAACCAATAGACAAACAATTCTCACCTAAATAAGTT
* *
4990 TTTAATTTAAAGACAAATAGTTGT
193 TTTAATTCAAAGACAAAAAGTTGT
* * * * * *
5014 TTACAAAATGATAAACTATTTGGTCCAAATGATGCGATTTCTCGAGCTTTGAATTTTTGAAAAAT
1 TTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
* * * * *
5079 TGCTCAAAGTAATAGATCATCTTGAATACTTTAAGGAACATAAGTTATAAACA-ATCTCGTAAAA
66 TGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAA-AGAACTCGTAAAA
* * * *
5143 GTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATTGACAAAAAATTCTCACGTAAATATGTTTT
130 GTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACAAACAATTCTCACCTAAATAAGTTTT
* *
5208 TAACTT-AGAGACCAAAAGTTGT
195 TAA-TTCAAAGACAAAAAGTTGT
* * * * *
5230 TTACAAAATGAGAAACAATTTGCACCAAATGAAGCGATTTAC-CAAGCATGGAATGTTCGAAAAA
1 TTACAAAATGACAAACTATTTGGACCAAATGATGCGATTT-CTCGAGCATGGAATGTTCGAAAAA
5294 TTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA
65 TTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA
* * * *
5359 GTTTGACAAGTTCAGAAGTTCGGCCAATG-ACCGATAGACAAACAATTCTCACCAAAATAAGTTT
130 GTTTGACAAGTTCGGAAGTTCGTCCAA-GAACCAATAGACAAACAATTCTCACCTAAATAAGTTT
* *
5423 TCAATTCAAAAACAAAAA-TTGTT
194 TTAATTCAAAGACAAAAAGTTG-T
* * * * * *
5446 TTAGAAAATGATAAACTATTTGGACCAAATGATGTGATTTCTTGAGAATGGAATGTTCAAAAAAT
1 TTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
* * ** * * *
5511 TTC-CTGAAGGAATGTATTGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATTGTAAAA
66 TGCTC-GAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA
* * * * * * * * *
5575 GTTTTACCAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAAAAAATCTCACATAAAAAAGTTTT
130 GTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACAAACAATTCTCACCTAAATAAGTTTT
* *
5640 CAATTCAAAGGCAAAAA-TTAGT
195 TAATTCAAAGACAAAAAGTT-GT
* * * *
5662 TTACAAAATGACAAACTAATTAGACCAAATGATGCGATTTTTCGAGCGTGGAATGTTC-AAAAAT
1 TTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
* * *
5726 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTTAAGTTATAAAAGAACTCGTAAAAC
66 TGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAG
* * * *
5791 TCTGACAAGTTCAGAATTTCAG-CCAAGAACC-ATGAGACAAACAATTCTCACGTAAATAAGTTT
131 TTTGACAAGTTCGGAAGTTC-GTCCAAGAACCAAT-AGACAAACAATTCTCACCTAAATAAGTTT
*
5854 TTAATTTAAAGACAAAAAGTTGT
194 TTAATTCAAAGACAAAAAGTTGT
* ** * * * * * **
5877 TTACAAAATGAGAAACTATTTAAAGCAAATTATGCGAATTCCCGAGCATGGAATGTTTGGGAAAT
1 TTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
* * *
5942 TCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAACTTATAAAAGAACTCGTAAAAG
66 TGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAG
** * * * *
6007 TTTGACAAGTTTAGAAGTTCGACCAAGGACTAATAGACAAACATTTCTCACAC-AAATAAGTTTT
131 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACAAACAATTCTCAC-CTAAATAAGTTTT
6071 TAATTCAAAGACAAAAAG-TGTT
195 TAATTCAAAGACAAAAAGTTG-T
* * * * * *
6093 TTACAAAATGACAAACTATTTGGACCAAATGACGTGGTTTCCCGAGAATGGAATGTTCTAAAAAC
1 TTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAA-
* * *
6158 TT-CTCGAAGAAATGCATCATTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA
65 TTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA
* ** * * *
6222 GTTTTACCGGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCAAAATAAGTTTT
130 GTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACAAACAATTCTCACCTAAATAAGTTTT
*
6287 TAATTCAAACACAAAAAGTTGT
195 TAATTCAAAGACAAAAAGTTGT
* * * * * *
6309 TTACAAAATGACAAACTAATTGGACCAAATGATACAATTTCTTGAGGATGGAATGTTCGGAAAAT
1 TTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
* * * * * *
6374 TGCTCGAAGGAATGGACCGTCTTGAATACTTTAAGGAACCTAAGTTATTAGAGAACTCATAAAAC
66 TGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAG
* * * *
6439 TTTGACAAGTTTGGAAGTTCAG-CCAATG-ATC-ATGAGACAAACAATTCTCACGTGAATAAGTT
131 TTTGACAAGTTCGGAAGTTC-GTCCAA-GAACCAAT-AGACAAACAATTCTCACCTAAATAAGTT
6501 TTTAATTCAAAGACAAAAAGTTGT
193 TTTAATTCAAAGACAAAAAGTTGT
* *
6525 TTACAAAATGAGAAACTATTTAGACCAAATG
1 TTACAAAATGACAAACTATTTGGACCAAATG
6556 TTTGTGAAAT
Statistics
Matches: 1666, Mismatches: 265, Indels: 80
0.83 0.13 0.04
Matches are distributed among these distances:
213 7 0.00
214 175 0.11
215 366 0.22
216 1102 0.66
217 16 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
TTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
TGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAG
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACAAACAATTCTCACCTAAATAAGTTTTT
AATTCAAAGACAAAAAGTTGT
Found at i:5538 original size:432 final size:430
Alignment explanation
Indices: 4369--9232 Score: 5155
Period size: 432 Copynumber: 11.4 Consensus size: 430
4359 GTTTGACAAG
* * *
4369 TTACAAAATGACATACTAA-TTGGACCAAATGGTGCGATTTCTCGAGCATGGAATGTCCGAAAAA
1 TTACAAAATGACAAAC-AATTTGGACCAAATGATGCGATTTC-CGAGCATGGAATGTTCGAAAAA
* ** *
4433 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTATGTTATTCAAGAACTTGTAAAA
64 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA
* *
4498 CTTTGACAAGTTCGGAAGTTCAGCCAAGGACC-ATGAGACAAACAATTCTCACCTAAATAAGTTT
129 GTTTGACAAGTTCAGAAGTTCAGCCAAGGACCAAT-AGACAAACAATTCTCACCTAAATAAGTTT
4562 TTAATTCAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAGACCAAATGATGCGATTTCT
193 TTAATTCAAAGACAAAAA-TTGTTTACAAAATGAGAAACTATTTAGACCAAATGATGCGATTTCT
* * * * * * *
4627 GGAGCATGGAATGGTCGGGAAATTCCTCAAAGTAAGGGATCATCTTGAATACTTTAAGGAACCGA
257 CGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTA
* * * *
4692 AGTTATAAAATAACTCGTAAAAGTTTGAC-AGTTCGAAAGTTCGGCCAAGGACCAATAGACAAAC
322 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACAAAC
* *
4756 AATTCTCACCAAAATAAGTTTTTAATTTAAAGAAAAAAAG-TGTT
387 AATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-T
* * * *
4800 TTA-AAGAATGACAAACTATTTGGACCAAATGATACGATTTCCCGAGAATGG-ATGTT-TAGAAA
1 TTACAA-AATGACAAACAATTTGGACCAAATGATGCGATTT-CCGAGCATGGAATGTTCGA-AAA
* * * * *
4862 ATTTCTCAAAGGAATGCATCATTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAA
63 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAA
* * * * * * *
4927 A-TTTTACCAGTTC-GAATATTCATCCAAGAACCAAGAGACAAACAATTCTCACCTAAATAACTT
128 AGTTTGACAAGTTCAGAA-GTTCAGCCAAGGACCAATAGACAAACAATTCTCACCTAAATAAGTT
* * * * *
4990 TTTAATTTAAAGACAAATAGTTGTTTACAAAATGATAAACTATTTGGTCCAAATGATGCGATTTC
192 TTTAATTCAAAGACAAA-AATTGTTTACAAAATGAGAAACTATTTAGACCAAATGATGCGATTTC
* * * * * * * * * *
5055 TCGAGCTTTGAATTTTTGAAAAATTGCTCAAAGTAATAGATCATCTTGAATACTTTAAGGAACAT
256 TCGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCT
* *
5120 AAGTTATAAACA-ATCTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATTGACAA
321 AAGTTATAAA-AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACAA
* ** * * *
5184 AAAATTCTCACGTAAATATGTTTTTAACTT-AGAGACCAAAAGTTGT
385 ACAATTCTCACCAAAATAAGTTTTTAA-TTCAAAGACAAAAAGTTGT
* * * *
5230 TTACAAAATGAGAAACAATTTGCACCAAATGAAGCGATTTACCAAGCATGGAATGTTCGAAAAAT
1 TTACAAAATGACAAACAATTTGGACCAAATGATGCGATTT-CCGAGCATGGAATGTTCGAAAAAT
*
5295 TGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAG
65 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAG
* * * * *
5360 TTTGACAAGTTCAGAAGTTCGGCCAATGACCGATAGACAAACAATTCTCACCAAAATAAGTTTTC
130 TTTGACAAGTTCAGAAGTTCAGCCAAGGACCAATAGACAAACAATTCTCACCTAAATAAGTTTTT
* * * * * *
5425 AATTCAAAAACAAAAATTGTTTTAGAAAATGATAAACTATTTGGACCAAATGATGTGATTTCTTG
195 AATTCAAAGACAAAAATTG-TTTACAAAATGAGAAACTATTTAGACCAAATGATGCGATTTCTCG
* ** * ** *
5490 AGAATGGAATGTTCAAAAAATTTCCT-GAAGGAATGTATTGTTTTGAATACTTTAAGGAACCTAA
259 AGCATGGAATGTTCGGAAAA-TTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAA
* * * * * * * *
5554 GTTATAAAAGAAATTGTAAAAGTTTTACCAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAAAA
323 GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACAAACA
* * * *
5619 AATCTCA-CATAAAAAAGTTTTCAATTCAAAGGCAAAAA-TTAGT
388 ATTCTCACCA-AAATAAGTTTTTAATTCAAAGACAAAAAGTT-GT
* * *
5662 TTACAAAATGACAAACTAA-TTAGACCAAATGATGCGATTTTTCGAGCGTGGAATGTTC-AAAAA
1 TTACAAAATGACAAAC-AATTTGGACCAAATGATGCGA-TTTCCGAGCATGGAATGTTCGAAAAA
*
5725 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTTAAGTTATAAAAGAACTCGTAAAA
64 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA
* * * * *
5790 CTCTGACAAGTTCAGAATTTCAGCCAAGAACC-ATGAGACAAACAATTCTCACGTAAATAAGTTT
129 GTTTGACAAGTTCAGAAGTTCAGCCAAGGACCAAT-AGACAAACAATTCTCACCTAAATAAGTTT
* * * * * *
5854 TTAATTTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAAAGCAAATTATGCGAATTCC
193 TTAATTCAAAGACAAAAA-TTGTTTACAAAATGAGAAACTATTTAGACCAAATGATGCGATTTCT
* * *
5919 CGAGCATGGAATGTTTGGGAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGA
257 CGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTA
* ** * * *
5984 ACTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTAGAAGTTCGACCAAGGACTAATAGACAAAC
322 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACAAAC
*
6049 ATTTCTCA-CACAAATAAGTTTTTAATTCAAAGACAAAAAG-TGTT
387 AATTCTCACCA-AAATAAGTTTTTAATTCAAAGACAAAAAGTTG-T
* * * * * *
6093 TTACAAAATGACAAACTATTTGGACCAAATGACGTGGTTTCCCGAGAATGGAATGTTCTAAAAAC
1 TTACAAAATGACAAACAATTTGGACCAAATGATGCGATTT-CCGAGCATGGAATGTTCGAAAAA-
* * * *
6158 TT-CTCGAAGAAATGCATCATTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA
64 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA
* ** * * * * *
6222 GTTTTACCGGTTCGGATGTTC-GTCCAAGAACCAAGAGACAAACAATTCTCACCAAAATAAGTTT
129 GTTTGACAAGTTCAGAAGTTCAG-CCAAGGACCAATAGACAAACAATTCTCACCTAAATAAGTTT
* * * * * *
6286 TTAATTCAAACACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATACAATTTCT
193 TTAATTCAAAGACAAAAA-TTGTTTACAAAATGAGAAACTATTTAGACCAAATGATGCGATTTCT
* * * * *
6351 TGAGGATGGAATGTTCGGAAAATTGCTCGAAGGAATGGACCGTCTTGAATACTTTAAGGAACCTA
257 CGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTA
* * * * * *
6416 AGTTATTAGAGAACTCATAAAACTTTGACAAGTTTGGAAGTTCAG-CCAATG-ATC-ATGAGACA
322 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTC-GTCCAA-GAACCAAT-AGACA
***
6478 AACAATTCTCACGTGAATAAGTTTTTAATTCAAAGACAAAAAGTTGT
384 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGT
* * *
6525 TTACAAAATGAGAAACTATTTAGACC-AA--AT--G---T-------T----TG-T-G--AAATT
1 TTACAAAATGACAAACAATTTGGACCAAATGATGCGATTTCCGAGCATGGAATGTTCGAAAAATT
* * * * * *
6567 CCTCAAAGTAACGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGT
66 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGT
* ** * *
6632 TTGACAAGTTCAGAAATTC-GACCAAGGACCAATAGATGAACAATTCTTACCAAAATAAGTTTTT
131 TTGACAAGTTCAGAAGTTCAG-CCAAGGACCAATAGACAAACAATTCTCACCTAAATAAGTTTTT
* * * * *
6696 AATTCAAAGATAAAAAGTGTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGGTTTCCCG
195 AATTCAAAGACAAAAATTG-TTTACAAAATGAGAAACTATTTAGACCAAATGATGCGATTTCTCG
* * * ** * * *
6761 AGAATGGAATGTTCGAAAAATTTCC-CGAAGGAATGCATTGTTTTGAATAATTTAAGGAGCCTAA
259 AGCATGGAATGTTCGGAAAA-TTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAA
* * * * * *
6825 GTTATAAAAGAACACGTAAAAGTTTTACCAGTTCGGATGTTCATCCAAGAACCAAGAGACAAACA
323 GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACAAACA
* *
6890 ATTCTCACCAAAATAAGCTTTTAATTCAAACACAAAAAGTTGT
388 ATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGT
* * * * * * *
6933 TTACAAAATGACAAACTAA-TCGAAACAAATGATGCGATTTCTCAAGCGTTGAATGTT-TAGAAA
1 TTACAAAATGACAAAC-AATTTGGACCAAATGATGCGATTTC-CGAGCATGGAATGTTCGA-AAA
**
6996 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATTCAAGAACTCGTAAA
63 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAA
* * * * * * *
7061 ACTTTGACAAGTTCGGAATTTCAACCAA-GAGCC-ATGACACAAACAATTCTCACGTAAATAAAT
128 AGTTTGACAAGTTCAGAAGTTCAGCCAAGGA-CCAAT-AGACAAACAATTCTCACCTAAATAAGT
* * * * *
7124 TTTTAATTTAAAGACAAAACGTTGTTTACAAAATCAGAAACTATTTAAAGCAAATGATGCGATTT
191 TTTTAATTCAAAGACAAAA-ATTGTTTACAAAATGAGAAACTATTTAGACCAAATGATGCGATTT
* *
7189 C-CTGAGCATGGAATGTTCGGGAAACTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAC
255 CTC-GAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAC
** * * ** * **
7253 GGAACTTATAAAAGAACTCGTAAAAGTTTTACAAGTTCAAAAGTTCGGCCAAGAAGTAATAGACA
319 CTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACA
* *
7318 AACAATTCTCACCTAAATCAGTTTTTAATTCAAAGACAAAAAG-TGTT
384 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-T
* * * *
7365 TTACAAAATGACAAACTATTTGGACCAAATGATGGGATTTCCCGAGAATGGAATGTTCGGAAAAT
1 TTACAAAATGACAAACAATTTGGACCAAATGATGCGATTT-CCGAGCATGGAATGTTCGAAAAAT
* * * * * * * *
7430 TTCTCAAAGGAATGCATTGTTTTTAATACTTTAAGGAACCTAAGTTATATAAGAACTCGTAAATG
65 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAG
* * **
7495 TTTCACAAGTTCAGATGTTCAGCCAAGGACCAATAGACAAACAATTCTCACAAAAATAAGTTTTT
130 TTTGACAAGTTCAGAAGTTCAGCCAAGGACCAATAGACAAACAATTCTCACCTAAATAAGTTTTT
* * *
7560 AATTCAAAGAC-AAAAGTGTTTTACAAAATG-GCAAACTATTTGGACCAAATGATGCGATTTCCC
195 AATTCAAAGACAAAAATTG-TTTACAAAATGAG-AAACTATTTAGACCAAATGATGCGATTTCTC
* * * ** * * *
7623 GAGAATGGAATGTTCAGAAAATTTCTCGAAGGAATACATCGTTTTGAATACTGTAAGGAACCTAA
258 GAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAA
* * * *
7688 GTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACCAATAGACAAATA
323 GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACAAACA
* * *
7753 TTTCTCACCAAAATAAG-TTTTAATTCAAATACGAAAAGTTGT
388 ATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGT
* * **
7795 TTACAAAATGACAAACTAA-TTGGACCAAATGATGCGATTTCTCGAGCATTGAATGTTCGGAGGA
1 TTACAAAATGACAAAC-AATTTGGACCAAATGATGCGATTTC-CGAGCATGGAATGTTCGAAAAA
* * ** *
7859 TTGCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCTATGTTATTCAAGAACTCGAAAAA
64 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA
* * * *
7924 CTTTGACAAGTTC-GAAAGTTCAGCCAGGGACC-ATGAGACAAATAATTCTCACGTAAATAAGTT
129 GTTTGACAAGTTCAG-AAGTTCAGCCAAGGACCAAT-AGACAAACAATTCTCACCTAAATAAGTT
* * * *
7987 TTTTATTTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAAACCAAATGATGCAATTTC
192 TTTAATTCAAAGACAAAAA-TTGTTTACAAAATGAGAAACTATTTAGACCAAATGATGCGATTTC
* * * * * *
8052 TGGAGCATGGAATGGTCAGG-AAATTCCTCAAAGTAA-GGAATCATGTTGAATACTTTAAGGAAT
256 TCGAGCATGGAATGTTC-GGAAAATTCCTCGAAGGAATGG-ATCATCTTGAATACTTTAAGGAAC
* * * * * *
8115 CGAACTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAGGTTCGGCCAAGGACCAATAAACA
319 CTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACA
*
8180 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGATAAAAAG-TGTT
384 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-T
* *
8227 TTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTCCGAAAAAT
1 TTACAAAATGACAAACAATTTGGACCAAATGATGCGATTTC-CGAGCATGGAATGTTCGAAAAAT
* * * ** *
8292 TGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACATATGTTATTTAAGAACTCGTAAAAT
65 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAG
* *
8357 TTTGACAAGTTC-GAAGGTTCAGCCAAGGACC-ATGAGACAAACAATTTTCACGTAAATAAGTTT
130 TTTGACAAGTTCAGAA-GTTCAGCCAAGGACCAAT-AGACAAACAATTCTCACCTAAATAAGTTT
* * * *
8420 TTAATTTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAAACCAAATGATACAATTTCT
193 TTAATTCAAAGACAAAAA-TTGTTTACAAAATGAGAAACTATTTAGACCAAATGATGCGATTTCT
* * * * * *
8485 GGAGCATGGAATGGTCGGGAAATTCCTC-AATGTAAGGGATCATCTTGAATACTTTAAGGAACCA
257 CGAGCATGGAATGTTCGGAAAATTCCTCGAA-GGAATGGATCATCTTGAATACTTTAAGGAACCT
* * *
8549 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTGGGCCAAGGACCAATAGACAAA
321 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACAAA
8614 CAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAG-TGTT
386 CAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-T
* * * *
8659 TTACAAAATGACAAACTATTTGGACCAAATGATACGATTTCCCGAGAATGGAATGTT-TAGAAAA
1 TTACAAAATGACAAACAATTTGGACCAAATGATGCGATTT-CCGAGCATGGAATGTTCGA-AAAA
* * *
8723 TTTCTCGAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTAT--AA-AA---G-AAAA
64 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA
* * * * *
8781 -TTTGTACCAGTTCGGATGTTC-GTCCAAGAACCAAGAGACAAACAATTCTCACCTAAATAAGTT
129 GTTTG-ACAAGTTCAGAAGTTCAG-CCAAGGACCAATAGACAAACAATTCTCACCTAAATAAGTT
* * * * * * *
8844 TTTAATTCAAAGACGAATAGTTGTTCACAAAATGACAAACTAATTGGTCCAAATGATGCGATTTC
192 TTTAATTCAAAGAC-AAAAATTGTTTACAAAATGAGAAACTATTTAGACCAAATGATGCGATTTC
* ** * * * ** *
8909 TCGAGCTTTAAATTTTCGAAAAATTGCTCGAAGGAATATATCGTCTTGAATA-TTGTAAGGAACC
256 TCGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGATCATCTTGAATACTT-TAAGGAACC
* * *
8973 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAATTCGAAAGTTCGTCCAAGAACCAATTGACAA
320 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACAA
* *** * *
9038 AAAATTCTCACGTGAATAAGTTTTTAACTCAAAGACCAAAAGTT-T
385 ACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGT
* ***
9083 TT------T-AC-AA-AA-TT----C---TCA--CG---TAAAAGCATGGAATGTTC-AGAAAAT
1 TTACAAAATGACAAACAATTTGGACCAAATGATGCGATTTCCGAGCATGGAATGTTCGA-AAAAT
* * * *
9125 TGCTCGAAGGAATGGATCATCTTCAATACTCTAAGGAACCTAAGTTATAAAAGAACTTGTAAAAG
65 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAG
* * *
9190 TTTGACAACTTCAGATGTTCGGCCAAGGACCAATAGACAAACA
130 TTTGACAAGTTCAGAAGTTCAGCCAAGGACCAATAGACAAACA
Statistics
Matches: 3739, Mismatches: 571, Indels: 269
0.82 0.12 0.06
Matches are distributed among these distances:
401 61 0.02
402 1 0.00
403 2 0.00
404 2 0.00
405 2 0.00
407 8 0.00
408 356 0.10
409 12 0.00
410 1 0.00
411 3 0.00
412 2 0.00
413 1 0.00
414 2 0.00
415 1 0.00
416 4 0.00
417 2 0.00
418 1 0.00
424 12 0.00
425 237 0.06
426 10 0.00
427 1 0.00
428 5 0.00
429 195 0.05
430 379 0.10
431 826 0.22
432 1584 0.42
433 29 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (430 bp):
TTACAAAATGACAAACAATTTGGACCAAATGATGCGATTTCCGAGCATGGAATGTTCGAAAAATT
GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGT
TTGACAAGTTCAGAAGTTCAGCCAAGGACCAATAGACAAACAATTCTCACCTAAATAAGTTTTTA
ATTCAAAGACAAAAATTGTTTACAAAATGAGAAACTATTTAGACCAAATGATGCGATTTCTCGAG
CATGGAATGTTCGGAAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTT
ATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGACAAACAATT
CTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGT
Found at i:5839 original size:647 final size:643
Alignment explanation
Indices: 4369--9232 Score: 5943
Period size: 647 Copynumber: 7.6 Consensus size: 643
4359 GTTTGACAAG
* * *
4369 TTACAAAATGACATACTAATTGGACCAAATGGTGCGATTTCTCGAGCATGGAATGTCCGAAAAAT
1 TTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
* ** *
4434 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTATGTTATTCAAGAACTTGTAAAAC
66 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAC
* *
4499 TTTGACAAGTTCGGAAGTTCAGCCAAGGACCATGAGACAAACAATTCTCACCTAAATAAGTTTTT
131 TTTGACAAGTTCGGAAGTTCAGCCAAGAACCATGAGACAAACAATTCTCACGTAAATAAGTTTTT
*
4564 AATTCAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAGACCAAATGATGCGATTTCTGG
196 AATT-AAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTT-GACCAAATGATGCGATTTC-CG
* * * *
4629 AGCATGGAATGGTCGGGAAATTCCTCAAAGTAAGGGATCATCTTGAATACTTTAAGGAACCGAAG
258 AGCATGGAATGTTCGGGAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAG
*
4694 TTATAAAATAACTCGTAAAAGTTTGAC-AGTTC-GAAAGTTCGGCCAAGGACCAATAGACAAACA
323 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGGCCAAGGACCAATAGACAAACA
* *
4757 ATTCTCACCAAAATAAGTTTTTAATTTAAAGAAAAAAAGTGTTTTA-AAGAATGACAAACTATTT
387 ATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAA-AATGACAAACTATTT
* * * *
4821 GGACCAAATGATACGATTTCCCGAGAATGG-ATGTTTAGAAAATTTCTCAAAGGAATGCATCATT
451 GGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAGAAAATTTCTCGAAGGAATGCATCGTT
* * *
4885 TTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA-TTTTACCAGTTCGAATATTCA
516 TTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCGGATGTTCG
* * * *
4949 TCCAAGAACCAAGAGACAAACAATTCTCACCTAAATAACTTTTTAATTTAAAGACAAATAGTTGT
581 TCCAAGAACCAAGAGACAAACAATTCTCA-CAAAATAAGTTTTTAATTCAAAGACAAA-AATTGT
* * * * * * *
5014 TTACAAAATGATAAACTATTTGGTCCAAATGATGCGATTTCTCGAGCTTTGAATTTTTGAAAAAT
1 TTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
* * * * * *
5079 TGCTCAAAGTAATAGATCATCTTGAATACTTTAAGGAACATAAGTTATAAACA-ATCTCGTAAAA
66 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAA-AGAACTCGTAAAA
* * * *
5143 GTTTGACAAGTTCGGAAGTTC-GTCCAAGAACCAAT-TGACAAAAAATTCTCACGTAAATATGTT
130 CTTTGACAAGTTCGGAAGTTCAG-CCAAGAACC-ATGAGACAAACAATTCTCACGTAAATAAGTT
* * * *
5206 TTTAACTTAGAGACCAAAAGTTGTTTACAAAATGAGAAACAATTTGCACCAAATGAAGCGATTTA
193 TTTAA-TTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTG-ACCAAATGATGCGATTT-
* ** * *
5271 CCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCT
255 CCGAGCATGGAATGTTCGGGAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCG
* *
5336 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCAATGACCGATAGACAAA
320 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCAAGGACCAATAGACAAA
* * * * *
5401 CAATTCTCACCAAAATAAGTTTTCAATTCAAAAACAAAAATTGTTTTAGAAAATGATAAACTATT
385 CAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAACTATT
* ** * * *
5466 TGGACCAAATGATGTGATTTCTTGAGAATGGAATGTTCAAAAAATTTC-CTGAAGGAATGTATTG
450 TGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAGAAAATTTCTC-GAAGGAATGCATCG
* * *
5530 TTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATTGTAAAAGTTTTACCAGTTCGGAAGTT
514 TTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCGGATGTT
* * * * * * *
5595 TGTCCAAGAACCAAGAGAGAAAAAAATCTCACATAAAAAAGTTTTCAATTCAAAGGCAAAAATTA
579 CGTCCAAGAACCAAGAGACAAACAATTCTCACA-AAATAAGTTTTTAATTCAAAGACAAAAATT-
5660 GT
642 GT
* * *
5662 TTACAAAATGACAAACTAATTAGACCAAATGATGCGATTTTTCGAGCGTGGAATGTTC-AAAAAT
1 TTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
*
5726 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTTAAGTTATAAAAGAACTCGTAAAAC
66 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAC
* * *
5791 TCTGACAAGTTCAGAATTTCAGCCAAGAACCATGAGACAAACAATTCTCACGTAAATAAGTTTTT
131 TTTGACAAGTTCGGAAGTTCAGCCAAGAACCATGAGACAAACAATTCTCACGTAAATAAGTTTTT
* * * *
5856 AATTTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAAAGCAAATTATGCGAATTCCCG
196 AA-TTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTT-GACCAAATGATGCG-ATTTCCG
* *
5921 AGCATGGAATGTTTGGGAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAC
258 AGCATGGAATGTTCGGGAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAG
* * * *
5986 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTTAGAAGTTCGACCAAGGACTAATAGACAAACAT
323 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCAAGGACCAATAGACAAACAA
6051 TTCTCA-CACAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAACTATTTG
388 TTCTCACCA-AAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAACTATTTG
* * * * * *
6115 GACCAAATGACGTGGTTTCCCGAGAATGGAATGTTCTA-AAAACTTCTCGAAGAAATGCATCATT
452 GACCAAATGATGCGATTTCCCGAGAATGGAATGTTC-AGAAAATTTCTCGAAGGAATGCATCGTT
*
6179 TTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCGGTTCGGATGTTCG
516 TTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCGGATGTTCG
*
6244 TCCAAGAACCAAGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAACACAAAAAGTTGT
581 TCCAAGAACCAAGAGACAAACAATTCTCA-CAAAATAAGTTTTTAATTCAAAGACAAAAA-TTGT
* * * * *
6309 TTACAAAATGACAAACTAATTGGACCAAATGATACAATTTCTTGAGGATGGAATGTTCGGAAAAT
1 TTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
* * * *
6374 TGCTCGAAGGAATGGACCGTCTTGAATACTTTAAGGAACCTAAGTTATTAGAGAACTCATAAAAC
66 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAC
* * *
6439 TTTGACAAGTTTGGAAGTTCAGCCAATG-ATCATGAGACAAACAATTCTCACGTGAATAAGTTTT
131 TTTGACAAGTTCGGAAGTTCAGCCAA-GAACCATGAGACAAACAATTCTCACGTAAATAAGTTTT
6503 TAATTCAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAGACC-AA--AT--G---T---
195 TAATT-AAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTT-GACCAAATGATGCGATTTCCG
* * * *
6557 ----T----TG-T---GAAATTCCTCAAAGTAACGGATCATCTTGAATACTTTAAGGAACCAAAG
258 AGCATGGAATGTTCGGGAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAG
* * **
6610 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAATTCGACCAAGGACCAATAGATGAACAA
323 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCAAGGACCAATAGACAAACAA
* * *
6675 TTCTTACCAAAATAAGTTTTTAATTCAAAGATAAAAAGTGTTTTACAAAATGACAAACTATTTAG
388 TTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAACTATTTGG
* * *
6740 ACCAAATGATGCGGTTTCCCGAGAATGGAATGTTC-GAAAAATTTCCCGAAGGAATGCATTGTTT
453 ACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAG-AAAATTTCTCGAAGGAATGCATCGTTT
* * * *
6804 TGAATAATTTAAGGAGCCTAAGTTATAAAAGAACACGTAAAAGTTTTACCAGTTCGGATGTTCAT
517 TGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCGGATGTTCGT
* *
6869 CCAAGAACCAAGAGACAAACAATTCTCACCAAAATAAGCTTTTAATTCAAACACAAAAAGTTGT
582 CCAAGAACCAAGAGACAAACAATTCTCA-CAAAATAAGTTTTTAATTCAAAGACAAAAA-TTGT
* * * * * * *
6933 TTACAAAATGACAAACTAATCGAAACAAATGATGCGATTTCTCAAGCGTTGAATGTT-TAGAAAA
1 TTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAAA
**
6997 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATTCAAGAACTCGTAAAA
65 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA
* * * * *
7062 CTTTGACAAGTTCGGAATTTCAACCAAGAGCCATGACACAAACAATTCTCACGTAAATAAATTTT
130 CTTTGACAAGTTCGGAAGTTCAGCCAAGAACCATGAGACAAACAATTCTCACGTAAATAAGTTTT
* * * *
7127 TAATTTAAAGACAAAACGTTGTTTACAAAATCAGAAACTATTTAAAGCAAATGATGCGATTTCCT
195 TAA-TTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTT-GACCAAATGATGCGATTTCC-
* *
7192 GAGCATGGAATGTTCGGGAAACTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACGGAA
257 GAGCATGGAATGTTCGGGAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAA
* * * * **
7257 CTTATAAAAGAACTCGTAAAAGTTTTACAAGTTCAAAAGTTCGGCCAAGAAGTAATAGACAAACA
322 GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCAAGGACCAATAGACAAACA
* *
7322 ATTCTCACCTAAATCAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAACTATTTG
387 ATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAACTATTTG
* * * *
7387 GACCAAATGATGGGATTTCCCGAGAATGGAATGTTCGGAAAATTTCTCAAAGGAATGCATTGTTT
452 GACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAGAAAATTTCTCGAAGGAATGCATCGTTT
* * * * * *
7452 TTAATACTTTAAGGAACCTAAGTTATATAAGAACTCGTAAATGTTTCACAAGTTCAGATGTTCAG
517 TGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCGGATGTTC-G
* * *
7517 -CCAAGGACCAATAGACAAACAATTCTCACAAAAATAAGTTTTTAATTCAAAGAC-AAAAGTGTT
581 TCCAAGAACCAAGAGACAAACAATTCTCAC-AAAATAAGTTTTTAATTCAAAGACAAAAATTG-T
* * * *
7580 TTACAAAATGGCAAACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC-AGAAAA
1 TTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAAA
* ** * *
7644 TTTCTCGAAGGAATACATCGTTTTGAATACTGTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA
65 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA
* * * * * * **
7709 GTTTTACCAGTTCGGATGTTC-GTCCAAGAACCAAT-AGACAAATATTTCTCACCAAAATAAG-T
130 CTTTGACAAGTTCGGAAGTTCAG-CCAAGAACC-ATGAGACAAACAATTCTCACGTAAATAAGTT
* * * *
7771 TTTAATTCAAATACGAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTC
193 TTTAATT-AAAGACAAAAAGTTGTTTACAAAATGAGAAACT-ATTTGACCAAATGATGCGATTTC
* * * *
7836 TCGAGCATTGAATGTTC-GGAGGATTGCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACC
256 -CGAGCATGGAATGTTCGGGA-AATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACC
* * ** * * * *
7900 TATGTTATTCAAGAACTCGAAAAACTTTGACAAGTTC-GAAAGTTCAGCCAGGGACC-ATGAGAC
319 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGGCCAAGGACCAAT-AGAC
* ** * * *
7963 AAATAATTCTCACGTAAATAAGTTTTTTATTTAAAGACAAAAAGT-TGTTTACAAAATGAGAAAC
382 AAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGT-TTTACAAAATGACAAAC
** * ** * * * * * * * *
8027 TATTTAAACCAAATGATGCAATTTCTGGAGCATGGAATGGTCAGGAAATTCCTCAAAGTAAGGAA
446 TATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAGAAAATTTCTCGAAGGAATGCA
* * * * * * * *
8092 TCATGTTGAATACTTTAAGGAATCGAACTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAG
511 TCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCGGAT
* * * * *
8157 GTTCGGCCAAGGACCAATAAACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGATAAAAA
576 GTTCGTCCAAGAACCAAGAGACAAACAATTCTCA-CAAAATAAGTTTTTAATTCAAAGACAAAAA
*
8222 GTGTT
640 TTG-T
* *
8227 TTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTCCGAAAAAT
1 TTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
* * * ** *
8292 TGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACATATGTTATTTAAGAACTCGTAAAAT
66 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAC
* *
8357 TTTGACAAGTTC-GAAGGTTCAGCCAAGGACCATGAGACAAACAATTTTCACGTAAATAAGTTTT
131 TTTGACAAGTTCGGAA-GTTCAGCCAAGAACCATGAGACAAACAATTCTCACGTAAATAAGTTTT
* * * *
8421 TAATTTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAAACCAAATGATACAATTTCTG
195 TAA-TTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTT-GACCAAATGATGCGATTTC-C
* * * *
8486 GAGCATGGAATGGTCGGGAAATTCCTC-AATGTAAGGGATCATCTTGAATACTTTAAGGAACCAA
257 GAGCATGGAATGTTCGGGAAATTCCTCGAA-GGAATGGATCATCTTGAATACTTTAAGGAACCGA
* *
8550 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTGGGCCAAGGACCAATAGACAAAC
321 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCAAGGACCAATAGACAAAC
8615 AATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAACTATTT
386 AATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAACTATTT
* *
8680 GGACCAAATGATACGATTTCCCGAGAATGGAATGTTTAGAAAATTTCTCGAAGGAATGCATCGTT
451 GGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAGAAAATTTCTCGAAGGAATGCATCGTT
8745 TTGAATACTTTAAGGAACCTAAGTTAT--AA-AA---G-AAAA-TTTGTACCAGTTCGGATGTTC
516 TTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTT-TACCAGTTCGGATGTTC
* * *
8802 GTCCAAGAACCAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACGAATAGTTG
580 GTCCAAGAACCAAGAGACAAACAATTCTCA-CAAAATAAGTTTTTAATTCAAAGAC-AAAAATTG
8867 T
643 T
* * * ** *
8868 TCACAAAATGACAAACTAATTGGTCCAAATGATGCGATTTCTCGAGCTTTAAATTTTCGAAAAAT
1 TTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
**
8933 TGCTCGAAGGAATATATCGTCTTGAATA-TTGTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA
66 TGCTCGAAGGAATGGATCGTCTTGAATACTT-TAAGGAACCTAAGTTATAAAAGAACTCGTAAAA
* * * * * *
8997 GTTTGACAAATTCGAAAGTTC-GTCCAAGAACCAAT-TGACAAAAAATTCTCACGTGAATAAGTT
130 CTTTGACAAGTTCGGAAGTTCAG-CCAAGAACC-ATGAGACAAACAATTCTCACGTAAATAAGTT
* * * * **
9060 TTTAACTCAAAGACCAAAAGTT-TTT------T-ACAAA--A-TT---C---TCA--CG---TAA
193 TTTAA-TTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTGACCAAATGATGCGATTTCC
* * * * * * *
9103 AAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTCAATACTCTAAGGAACCTAA
257 GAGCATGGAATGTTCGGGAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAA
* * *
9168 GTTATAAAAGAACTTGTAAAAGTTTGACAACTTCAGATGTTCGGCCAAGGACCAATAGACAAACA
322 GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCAAGGACCAATAGACAAACA
Statistics
Matches: 3639, Mismatches: 487, Indels: 214
0.84 0.11 0.05
Matches are distributed among these distances:
617 112 0.03
618 3 0.00
621 1 0.00
623 3 0.00
624 548 0.15
625 6 0.00
626 1 0.00
627 3 0.00
628 2 0.00
629 1 0.00
630 2 0.00
631 1 0.00
632 2 0.00
633 4 0.00
634 1 0.00
640 10 0.00
641 246 0.07
642 10 0.00
643 1 0.00
644 4 0.00
645 311 0.09
646 495 0.14
647 968 0.27
648 893 0.25
649 11 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (643 bp):
TTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAC
TTTGACAAGTTCGGAAGTTCAGCCAAGAACCATGAGACAAACAATTCTCACGTAAATAAGTTTTT
AATTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTGACCAAATGATGCGATTTCCGAGC
ATGGAATGTTCGGGAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA
TAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCAAGGACCAATAGACAAACAATTC
TCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAACTATTTGGACC
AAATGATGCGATTTCCCGAGAATGGAATGTTCAGAAAATTTCTCGAAGGAATGCATCGTTTTGAA
TACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCGGATGTTCGTCCAA
GAACCAAGAGACAAACAATTCTCACAAAATAAGTTTTTAATTCAAAGACAAAAATTGT
Found at i:6722 original size:192 final size:192
Alignment explanation
Indices: 6393--6747 Score: 500
Period size: 192 Copynumber: 1.8 Consensus size: 192
6383 GAATGGACCG
* * * ** *
6393 TCTTGAATACTTTAAGGAACCTAAGTTATTAGAGAACTCATAAAACTTTGACAAGTTTGGAAGTT
1 TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAACTTTGACAAGTTCAGAAATT
* * ***
6458 CAGCCAATGATCATGAGACAAACAATTCTCACGTGAATAAGTTTTTAATTCAAAGACAAAAAGTT
66 CAGCCAAGGACCATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTT
*
6523 GTTTACAAAATGAGAAACTATTTAGACCAAATGTTTGTGAAATTCCTCAAAGTAACGGATCA
131 GTTTACAAAATGACAAACTATTTAGACCAAATGTTTGTGAAATTCCTCAAAGTAACGGATCA
* *
6585 TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAATT
1 TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAACTTTGACAAGTTCAGAAATT
** * *
6650 C-GACCAAGGACCAAT-AGATGAACAATTCTTACCAAAATAAGTTTTTAATTCAAAGATAAAAAG
66 CAG-CCAAGGACC-ATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAG
6713 -TGTTTTACAAAATGACAAACTATTTAGACCAAATG
129 TTG-TTTACAAAATGACAAACTATTTAGACCAAATG
6748 ATGCGGTTTC
Statistics
Matches: 142, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
191 3 0.02
192 137 0.96
193 2 0.01
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (192 bp):
TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAACTTTGACAAGTTCAGAAATT
CAGCCAAGGACCATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTT
GTTTACAAAATGACAAACTATTTAGACCAAATGTTTGTGAAATTCCTCAAAGTAACGGATCA
Found at i:6964 original size:216 final size:216
Alignment explanation
Indices: 6579--9092 Score: 2759
Period size: 216 Copynumber: 11.7 Consensus size: 216
6569 TCAAAGTAAC
* * *
6579 GGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCA
1 GGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * ** * *
6644 GAAATTC-GACCAAGGACCAATAGATGAACAATTCTTACCAAAATAAGTTTTTAATTCAAAGATA
66 GAAGTTCAG-CCAAGAACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACA
* * * * *
6708 AAAAG-TGTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGGTTTCCCGAGAATGGAATG
130 AAAAGTTG-TTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATG
*
6772 TTCGAAAAATTTCCCGAAGGAAT
194 TTCGAAAAATTTCTCGAAGGAAT
* * * * * * * *
6795 GCATTGTTTTGAATAATTTAAGGAGCCTAAGTTATAAAAGAACACGTAAAAGTTTTACCAGTTCG
1 GGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * * * *
6860 GATGTTCATCCAAGAACCAAGAGACAAACAATTCTCACCAAAATAAGCTTTTAATTCAAACACAA
66 GAAGTTCAGCCAAGAACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAA
* * * * * *
6925 AAAGTTGTTTACAAAATGACAAACTAATCGAAACAAATGATGCGATTTCTCAAGCGTTGAATGTT
131 AAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTT
* *
6990 -TAGAAAATTGCTCGAAGGAAT
196 CGA-AAAATTTCTCGAAGGAAT
** *
7011 GGATCGTCTTGAATACTTTAAGGAACCTAAGTTATTCAAGAACTCGTAAAACTTTGACAAGTTCG
1 GGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * * * ** * *
7076 GAATTTCAACCAAGAGCC-ATGACACAAACAATTCTCACGTAAATAAATTTTTAATTTAAAGACA
66 GAAGTTCAGCCAAGAACCAAT-AGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACA
* * * * ** *
7140 AAACGTTGTTTACAAAATCAGAAACTATTTAAAGCAAATGATGCGATTTC-CTGAGCATGGAATG
130 AAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTC-GAGCATGGAATG
** * *
7204 TTCGGGAAACTCCTCGAAGGAAT
194 TTCGAAAAATTTCTCGAAGGAAT
* ** * * *
7227 GGATCATCTTGAATACTTTAAGGAACGGAACTTATAAAAGAACTCGTAAAAGTTTTACAAGTTCA
1 GGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * ** * *
7292 AAAGTTCGGCCAAGAAGTAATAGACAAACAATTCTCACCTAAATCAGTTTTTAATTCAAAGACAA
66 GAAGTTCAGCCAAGAACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAA
* * * *
7357 AAAG-TGTTTTACAAAATGACAAACTATTTGGACCAAATGATGGGATTTCCCGAGAATGGAATGT
131 AAAGTTG-TTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGT
* *
7421 TCGGAAAATTTCTCAAAGGAAT
195 TCGAAAAATTTCTCGAAGGAAT
* * * * * * * *
7443 GCATTGTTTTTAATACTTTAAGGAACCTAAGTTATATAAGAACTCGTAAATGTTTCACAAGTTCA
1 GGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * *
7508 GATGTTCAGCCAAGGACCAATAGACAAACAATTCTCACAAAAATAAGTTTTTAATTCAAAGAC-A
66 GAAGTTCAGCCAAGAACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAA
* * * *
7572 AAAG-TGTTTTACAAAATGGCAAACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGT
131 AAAGTTG-TTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGT
7636 TC-AGAAAATTTCTCGAAGGAAT
195 TCGA-AAAATTTCTCGAAGGAAT
** * * * *
7658 ACATCGTTTTGAATACTGTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCG
1 GGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * * * *
7723 GATGTTC-GTCCAAGAACCAATAGACAAATATTTCTCACCAAAATAAG-TTTTAATTCAAATACG
66 GAAGTTCAG-CCAAGAACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACA
*
7786 AAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATTGAATGT
130 AAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGT
* ** *
7851 TCGGAGGATTGCTCGAAGGAAT
195 TCGAAAAATTTCTCGAAGGAAT
* * ** * *
7873 GGATCTTCTTGAATACTTTAAGGAACCTATGTTATTCAAGAACTCGAAAAACTTTGACAAGTTCG
1 GGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * * * ** * *
7938 AAAGTTCAGCCAGGGACC-ATGAGACAAATAATTCTCACGTAAATAAGTTTTTTATTTAAAGACA
66 GAAGTTCAGCCAAGAACCAAT-AGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACA
* * ** * * *
8002 AAAAGTTGTTTACAAAATGAGAAACTATTTAAACCAAATGATGCAATTTCTGGAGCATGGAATGG
130 AAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGT
* * * *
8067 TC-AGGAAATTCCTCAAAGTAA-
195 TCGA-AAAATTTCTCGAAGGAAT
* * * * *
8088 GGAATCATGTTGAATACTTTAAGGAATCGAACTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
1 GG-ATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
* * * * *
8153 GGAGGTTCGGCCAAGGACCAATAAACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGATA
65 GGAAGTTCAGCCAAGAACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACA
*
8218 AAAAG-TGTTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATG
130 AAAAGTTG-TTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATG
* * *
8282 TCCGAAAAATTGCTTGAAGGAAT
194 TTCGAAAAATTTCTCGAAGGAAT
* * ** *
8305 GGATCGTCTTGAATACTTTAAGGAACATATGTTATTTAAGAACTCGTAAAATTTTGACAAGTTC-
1 GGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * ** *
8369 GAAGGTTCAGCCAAGGACC-ATGAGACAAACAATTTTCACGTAAATAAGTTTTTAATTTAAAGAC
66 GAA-GTTCAGCCAAGAACCAAT-AGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC
* * ** * * *
8433 AAAAAGTTGTTTACAAAATGAGAAACTATTTAAACCAAATGATACAATTTCTGGAGCATGGAATG
129 AAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATG
* ** * * *
8498 GTCGGGAAATTCCTC-AATGTAAG
194 TTCGAAAAATTTCTCGAA-GGAAT
* *
8521 GGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
1 GGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
** *
8586 GAAGTTGGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAA
66 GAAGTTCAGCCAAGAACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAA
* * * *
8651 AAAG-TGTTTTACAAAATGACAAACTATTTGGACCAAATGATACGATTTCCCGAGAATGGAATGT
131 AAAGTTG-TTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGT
*
8715 T-TAGAAAATTTCTCGAAGGAAT
195 TCGA-AAAATTTCTCGAAGGAAT
* * *
8737 GCATCGTTTTGAATACTTTAAGGAACCTAAGTTAT--AA-AA---G-AAAA-TTTGTACCAGTTC
1 GGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTG-ACAAGTTC
* * *
8794 GGATGTTC-GTCCAAGAACCAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGAC
65 GGAAGTTCAG-CCAAGAACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC
* * * * * ** *
8858 GAATAGTTGTTCACAAAATGACAAACTAATTGGTCCAAATGATGCGATTTCTCGAGCTTTAAATT
129 AAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATG
*
8923 TTCGAAAAATTGCTCGAAGGAAT
194 TTCGAAAAATTTCTCGAAGGAAT
** *
8946 ATATCGTCTTGAATA-TTGTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAATTC
1 GGATCGTCTTGAATACTT-TAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
* * * *** *
9010 GAAAGTTC-GTCCAAGAACCAATTGACAAAAAATTCTCACGTGAATAAGTTTTTAACTCAAAGAC
65 GGAAGTTCAG-CCAAGAACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC
* *
9074 CAAAAGTTTTTTACAAAAT
129 AAAAAGTTGTTTACAAAAT
9093 TCTCACGTAA
Statistics
Matches: 1928, Mismatches: 325, Indels: 90
0.82 0.14 0.04
Matches are distributed among these distances:
208 7 0.00
209 166 0.09
210 4 0.00
211 2 0.00
212 2 0.00
213 2 0.00
214 19 0.01
215 359 0.19
216 1344 0.70
217 23 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
GGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
GAAGTTCAGCCAAGAACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAA
AAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTT
CGAAAAATTTCTCGAAGGAAT
Found at i:8379 original size:862 final size:856
Alignment explanation
Indices: 4369--9092 Score: 4965
Period size: 863 Copynumber: 5.5 Consensus size: 856
4359 GTTTGACAAG
* * * **
4369 TTACAAAATGACATACTAATTGGACCAAATGGTGCGATTTCTCGAGCATGGAATG-TCCGAAAAA
1 TTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATTGAATGTTTAG-AAAA
* * *
4433 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTATGTTATTCAAGAACTTGTAAAA
65 TTGCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCTAAGTTATTCAAGAACTCG-AAAA
*
4498 CTTTGACAAGTTCGGAAGTTCAGCCAAGGACCATGAGACAAACAATTCTCACCTAAATAAGTTTT
129 CTTTGACAAGTTCGGAAGTTCAGCC-AGGACCATGAGACAAACAATTCTCACGTAAATAAGTTTT
* *
4563 TAATTCAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAGACCAAATGATGCGATTTCTG
193 TAATTTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAAACCAAATGATGCGATTTCT-
* * * *
4628 GAGCATGGAATGGTCGGGAAATTCCTCAAAGTAAGGGATCATCTTGAATACTTTAAGGAACCGAA
257 GAGCATGGAATGTTC-GGAAATTCCTCGAAGGAAGGAATCATCTTGAATACTTTAAGGAA-CGAA
* * *
4693 GTTATAAAATAACTCGTAAAAGTTTGAC-AGTTCGAAAGTTCGGCCAAGGACCAATAGACAAACA
320 CTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAATAGACAAACA
* * *
4757 ATTCTCACCAAAATAAGTTTTTAATTTAAAGAAAAAAAGTGTTTTA-AAGAATGACAAACTATTT
385 ATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAA-AATGACAAACTATTT
* ** * * *
4821 GGACCAAATGATACGATTTCCCGAGAATGG-ATGT-TTAGAAAATTTCTCAAAGGAATGCATCAT
449 GGACCAAATGATGCGATTTCCCGAGAATGGAATGTCCGA-AAAATTGCTCAAAGGAATGGATCGT
* * * * *
4884 TTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAATTTT-ACCAGTTCGAATATTC
513 CTTGAATACTTTAAGGAACATAAGTTATATAAGAACTCGTAAAATTTTGACAAGTTCGAA-GTTC
* * * ** * *
4948 ATCCAAGAACCAAGAGACAAACAATTCTCACCTAAATAACTTTTTAATTTAAAGACAAATAGT-T
577 AGCCAAGGACCAATAGACAAACAATTCTCACAAAAATAAGTTTTTAATTCAAAGACAAA-AGTGT
** * * * ** * * *
5012 GTTTACAAAATGATAAACTATTTGGTCCAAATGATGCGATTTCTCGAGCTTTGAATTTTTGAAAA
641 -TTTACAAAATGGCAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCG-AAA
* * * * * * *
5077 ATTGCTCAAAGTAATAG-ATCATCTTGAATACTTTAAGGAACATAAGTTATAAACA-ATCTCGTA
704 ATTTCTCGAAGGAAT-GCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAA-AGAACTCGTA
* * * * * ** * *
5140 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATTGACAAAAAATTCTCACGTAAATATGT
767 AAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACCAATAGACAAACAATTCTCACCAAAATAAGC
* * *
5205 TTTTAACTT-AGAGACCAAAAGTTGT
832 TTTTAA-TTCAAACACAAAAAGTTGT
* * * * * *
5230 TTACAAAATGAGAAAC-AATTTGCACCAAATGAAGCGATTTAC-CAAGCATGGAATG-TTCGAAA
1 TTACAAAATGACAAACTAA-TTGGACCAAATGATGCGATTT-CTCGAGCATTGAATGTTTAG-AA
* **
5292 AATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAA
63 AATTGCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCTAAGTTATTCAAGAACTCG-AA
* * * * **
5357 AAGTTTGACAAGTTCAGAAGTTCGGCCAATGACCGAT-AGACAAACAATTCTCACCAAAATAAGT
127 AACTTTGACAAGTTCGGAAGTTCAGCC-AGGACC-ATGAGACAAACAATTCTCACGTAAATAAGT
* * * * * ** *
5421 TTTCAATTCAAAAACAAAAA-TTGTTTTAGAAAATGATAAACTATTTGGACCAAATGATGTGATT
190 TTTTAATTTAAAGACAAAAAGTTG-TTTACAAAATGAGAAACTATTTAAACCAAATGATGCGATT
* ** * * ** *
5485 TCTTGAGAATGGAATGTTCAAAAAATTTCCT-GAAGGAATGTATTGTTTTGAATACTTTAAGGAA
254 TC-TGAGCATGGAATGTTC-GGAAA-TTCCTCGAAGGAAGGAATCATCTTGAATACTTTAAGGAA
* * * * * * * * * * *
5549 CCTAAGTTATAAAAGAAATTGTAAAAGTTTTACCAGTTCGGAAGTTTGTCCAAGAACCAAGAGAG
316 -CGAACTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAATAGAC
* * * * * * *
5614 AAAAAAATCTCACATAAAAAAGTTTTCAATTCAAAGGCAAAAATTAG-TTTACAAAATGACAAAC
380 AAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGT-GTTTTACAAAATGACAAAC
* * ** ** * *
5678 TAATTAGACCAAATGATGCGATTTTTCGAGCGTGGAATGTTC-AAAAATTGCTCGAAGGAATGGA
444 TATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTCCGAAAAATTGCTCAAAGGAATGGA
* * * *
5742 TCGTCTTGAATACTTTAAGGAACTTAAGTTATAAAAGAACTCGTAAAACTCTGACAAGTTCAGAA
509 TCGTCTTGAATACTTTAAGGAACATAAGTTATATAAGAACTCGTAAAATTTTGACAAGTTC-GAA
* * ** *
5807 TTTCAGCCAAGAACC-ATGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACAAAA
573 GTTCAGCCAAGGACCAAT-AGACAAACAATTCTCACAAAAATAAGTTTTTAATTCAAAGAC-AAA
* * * * *
5871 AGT-TGTTTACAAAATGAG-AAACTATTTAAAGCAAATTATGCGAATTCCCGAGCATGGAATGTT
636 AGTGT-TTTACAAAATG-GCAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATG-T
* * * * * * * *
5934 TGGGAAATTCCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAACTTATAAAAGAACT
698 TCGAAAATTTCTCGAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACT
* * ** * * * * *
5999 CGTAAAAGTTTGACAAGTTTAGAAGTTCGACCAAGGACTAATAGACAAACATTTCTCA-CACAAA
763 CGTAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACCAATAGACAAACAATTCTCACCA-AAA
* *
6063 TAAGTTTTTAATTCAAAGACAAAAAG-TGTT
827 TAAGCTTTTAATTCAAACACAAAAAGTTG-T
* * * * * * *
6093 TTACAAAATGACAAACTATTTGGACCAAATGACGTGGTTTCCCGAGAATGGAATGTTCTA-AAAA
1 TTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATTGAATGTT-TAGAAAA
* * **
6157 CTT-CTCGAAGAAATGCATCATT-TTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAA
65 -TTGCTCGAAGGAATGGATC-TTCTTGAATACTTTAAGGAACCTAAGTTATTCAAGAACTCG-AA
* * ** * * * **
6220 AAGTTTTACCGGTTCGGATGTTC-GTCCAAGAACCAAGAGACAAACAATTCTCACCAAAATAAGT
127 AACTTTGACAAGTTCGGAAGTTCAG-CC-AGGACCATGAGACAAACAATTCTCACGTAAATAAGT
* * * * ** * *
6284 TTTTAATTCAAACACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATACAATTT
190 TTTTAATTTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAAACCAAATGATGCGATTT
* * * *
6349 CTTGAGGATGGAATGTTCGGAAAATTGCTCGAAGGAATGG-ACCGTCTTGAATACTTTAAGGAAC
255 C-TGAGCATGGAATGTTCGG-AAATTCCTCGAAGGAA-GGAATCATCTTGAATACTTTAAGGAA-
* * * * * * * * * *
6413 CTAAGTTATTAGAGAACTCATAAAACTTTGACAAGTTTGGAAGTTCAGCCAATG-ATC-ATGAGA
316 CGAACTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAA-GAACCAAT-AGA
* * *
6476 CAAACAATTCTCACGTGAATAAGTTTTTAATTCAAAGACAAAAAGT-TGTTTACAAAATGAGAAA
379 CAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTGT-TTTACAAAATGACAAA
* * * *
6540 CTATTTAGACC-AA--AT--G---T--------T----TGT--G--AAATTCCTCAAAGTAACGG
443 CTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTCCGAAAAATTGCTCAAAGGAATGG
* * *
6581 ATCATCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG
508 ATCGTCTTGAATACTTTAAGGAA-CATAAGTTATATAAGAACTCGTAAAATTTTGACAAGTTC-G
* ** * * *
6645 AAATTC-GACCAAGGACCAATAGATGAACAATTCTTACCAAAATAAGTTTTTAATTCAAAGATAA
571 AAGTTCAG-CCAAGGACCAATAGACAAACAATTCTCACAAAAATAAGTTTTTAATTCAAAGA-CA
* *
6709 AAAGTGTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGGTTTCCCGAGAATGGAATGTT
634 AAAGTGTTTTACAAAATGGCAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTT
* * * * *
6774 CGAAAAATTTCCCGAAGGAATGCATTGTTTTGAATAATTTAAGGAGCCTAAGTTATAAAAGAACA
699 CG-AAAATTTCTCGAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACT
* *
6839 CGTAAAAGTTTTACCAGTTCGGATGTTCATCCAAGAACCAAGAGACAAACAATTCTCACCAAAAT
763 CGTAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACCAATAGACAAACAATTCTCACCAAAAT
6904 AAGCTTTTAATTCAAACACAAAAAGTTGT
828 AAGCTTTTAATTCAAACACAAAAAGTTGT
* * * * *
6933 TTACAAAATGACAAACTAATCGAAACAAATGATGCGATTTCTCAAGCGTTGAATGTTTAGAAAAT
1 TTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATTGAATGTTTAGAAAAT
*
6998 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATTCAAGAACTCGTAAAAC
66 TGCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCTAAGTTATTCAAGAACTCG-AAAAC
* * * * *
7063 TTTGACAAGTTCGGAATTTCAACCAAGAGCCATGACACAAACAATTCTCACGTAAATAAATTTTT
130 TTTGACAAGTTCGGAAGTTCAGCCAGGA-CCATGAGACAAACAATTCTCACGTAAATAAGTTTTT
* * *
7128 AATTTAAAGACAAAACGTTGTTTACAAAATCAGAAACTATTTAAAGCAAATGATGCGATTTCCTG
194 AATTTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAAACCAAATGATGCGATTT-CTG
*
7193 AGCATGGAATGTTCGGGAAACTCCTCGAAGGAATGG-ATCATCTTGAATACTTTAAGGAACGGAA
258 AGCATGGAATGTTC-GGAAATTCCTCGAAGGAA-GGAATCATCTTGAATACTTTAAGGAAC-GAA
* * **
7257 CTTATAAAAGAACTCGTAAAAGTTTTACAAGTTCAAAAGTTCGGCCAAGAAGTAATAGACAAACA
320 CTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAATAGACAAACA
*
7322 ATTCTCACCTAAATCAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAACTATTTG
385 ATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAACTATTTG
* * * * * * *
7387 GACCAAATGATGGGATTTCCCGAGAATGGAATGTTCGGAAAATTTCTCAAAGGAATGCATTGTTT
450 GACCAAATGATGCGATTTCCCGAGAATGGAATGTCCGAAAAATTGCTCAAAGGAATGGATCGTCT
* * * *
7452 TTAATACTTTAAGGAACCTAAGTTATATAAGAACTCGT-AAATGTTTCACAAGTTCAGATGTTCA
515 TGAATACTTTAAGGAACATAAGTTATATAAGAACTCGTAAAAT-TTTGACAAGTTC-GAAGTTCA
7516 GCCAAGGACCAATAGACAAACAATTCTCACAAAAATAAGTTTTTAATTCAAAGACAAAAGTGTTT
578 GCCAAGGACCAATAGACAAACAATTCTCACAAAAATAAGTTTTTAATTCAAAGACAAAAGTGTTT
*
7581 TACAAAATGGCAAACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAGAAAATT
643 TACAAAATGGCAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC-GAAAATT
* *
7646 TCTCGAAGGAATACATCGTTTTGAATACTGTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGT
707 TCTCGAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGT
* *
7711 TTTACCAGTTCGGATGTTCGTCCAAGAACCAATAGACAAATATTTCTCACCAAAATAAG-TTTTA
772 TTTACCAGTTCGGATGTTCGTCCAAGAACCAATAGACAAACAATTCTCACCAAAATAAGCTTTTA
* *
7775 ATTCAAATACGAAAAGTTGT
837 ATTCAAACACAAAAAGTTGT
** **
7795 TTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATTGAATGTTCGGAGGAT
1 TTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATTGAATGTTTAGAAAAT
*
7860 TGCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCTATGTTATTCAAGAACTCGAAAAAC
66 TGCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCTAAGTTATTCAAGAACTCG-AAAAC
* *
7925 TTTGACAAGTTCGAAAGTTCAGCCAGGGACCATGAGACAAATAATTCTCACGTAAATAAGTTTTT
130 TTTGACAAGTTCGGAAGTTCAGCCA-GGACCATGAGACAAACAATTCTCACGTAAATAAGTTTTT
* *
7990 TATTTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAAACCAAATGATGCAATTTCTGG
194 AATTTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAAACCAAATGATGCGATTTCT-G
* * * *
8055 AGCATGGAATGGTCAGGAAATTCCTCAAAGTAAGGAATCATGTTGAATACTTTAAGGAATCGAAC
258 AGCATGGAATGTTC-GGAAATTCCTCGAAGGAAGGAATCATCTTGAATACTTTAAGGAA-CGAAC
* * * *
8120 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAGGTTCGGCCAAGGACCAATAAACAAACAA
321 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAATAGACAAACAA
* *
8185 TTCTCACCAAAATAAGTTTTTAATTCAAAGATAAAAAGTGTTTTACAAAATGACAAACTATTTGG
386 TTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAACTATTTGG
* * **
8250 ACCAAATGATGCGATTTCTCGAGCATGGAATGTCCGAAAAATTGCTTGAAGGAATGGATCGTCTT
451 ACCAAATGATGCGATTTCCCGAGAATGGAATGTCCGAAAAATTGCTCAAAGGAATGGATCGTCTT
* *
8315 GAATACTTTAAGGAACATATGTTATTTAAGAACTCGTAAAATTTTGACAAGTTCGAAGGTTCAGC
516 GAATACTTTAAGGAACATAAGTTATATAAGAACTCGTAAAATTTTGACAAGTTCGAA-GTTCAGC
* ** *
8380 CAAGGACC-ATGAGACAAACAATTTTCACGTAAATAAGTTTTTAATTTAAAGACAAAAAGT-TGT
580 CAAGGACCAAT-AGACAAACAATTCTCACAAAAATAAGTTTTTAATTCAAAGAC-AAAAGTGT-T
* * * ** * * *
8443 TTACAAAATGAG-AAACTATTTAAACCAAATGATACAATTTCTGGAGCATGGAATGGTCGGGAAA
642 TTACAAAATG-GCAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC-GAAAA
* * * * * * *
8507 TTCCTC-AATGTAAGGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
705 TTTCTCGAA-GGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAA
* * * * * * *
8571 AGTTTGACAAGTTCGGAAGTTGGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTT
769 AGTTTTACCAGTTCGGATGTTCGTCCAAGAACCAATAGACAAACAATTCTCACCAAAATAAGCTT
*
8636 TTAATTCAAAGACAAAAAG-TGTT
834 TTAATTCAAACACAAAAAGTTG-T
* * * * *
8659 TTACAAAATGACAAACTATTTGGACCAAATGATACGATTTCCCGAGAATGGAATGTTTAGAAAAT
1 TTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATTGAATGTTTAGAAAAT
* *
8724 TTCTCGAAGGAATGCATCGTT-TTGAATACTTTAAGGAACCTAAGTTA-T-AA-AA---GAAAA-
66 TGCTCGAAGGAATGGATC-TTCTTGAATACTTTAAGGAACCTAAGTTATTCAAGAACTCGAAAAC
* * * * *
8781 TTTGTACCAGTTCGGATGTTC-GTCCAAGAACCAAGAGACAAACAATTCTCACCTAAATAAGTTT
130 TTTG-ACAAGTTCGGAAGTTCAG-CC-AGGACCATGAGACAAACAATTCTCACGTAAATAAGTTT
* * * * * * ***
8845 TTAATTCAAAGACGAATAGTTGTTCACAAAATGACAAACTAATTGGTCCAAATGATGCGATTTCT
192 TTAATTTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAAACCAAATGATGCGATTTCT
* ** * * * * *
8910 CGAGCTTTAAATTTTCGAAAAATTGCTCGAAGGAA-TATATCGTCTTGAATA-TTGTAAGGAACC
257 -GAGCATGGAATGTTCG-GAAATTCCTCGAAGGAAGGA-ATCATCTTGAATACTT-TAAGGAA-C
* * * * *
8973 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAATTCGAAAGTTCGTCCAAGAACCAATTGACAA
317 GAACTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAATAGACAA
* * * * * *
9038 AAAATTCTCACGTGAATAAGTTTTTAACTCAAAGACCAAAAGTTTTTTACAAAAT
382 ACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAAT
9093 TCTCACGTAA
Statistics
Matches: 3282, Mismatches: 474, Indels: 218
0.83 0.12 0.05
Matches are distributed among these distances:
839 13 0.00
840 667 0.20
841 16 0.00
843 5 0.00
845 1 0.00
847 1 0.00
848 1 0.00
855 1 0.00
856 10 0.00
857 251 0.08
858 3 0.00
860 10 0.00
861 302 0.09
862 776 0.24
863 965 0.29
864 256 0.08
865 4 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (856 bp):
TTACAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCATTGAATGTTTAGAAAAT
TGCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCTAAGTTATTCAAGAACTCGAAAACT
TTGACAAGTTCGGAAGTTCAGCCAGGACCATGAGACAAACAATTCTCACGTAAATAAGTTTTTAA
TTTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAAACCAAATGATGCGATTTCTGAGC
ATGGAATGTTCGGAAATTCCTCGAAGGAAGGAATCATCTTGAATACTTTAAGGAACGAACTTATA
AAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAATAGACAAACAATTCTC
ACCTAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAACTATTTGGACCAA
ATGATGCGATTTCCCGAGAATGGAATGTCCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATA
CTTTAAGGAACATAAGTTATATAAGAACTCGTAAAATTTTGACAAGTTCGAAGTTCAGCCAAGGA
CCAATAGACAAACAATTCTCACAAAAATAAGTTTTTAATTCAAAGACAAAAGTGTTTTACAAAAT
GGCAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAATTTCTCGAAGG
AATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGT
TCGGATGTTCGTCCAAGAACCAATAGACAAACAATTCTCACCAAAATAAGCTTTTAATTCAAACA
CAAAAAGTTGT
Done.