Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004531.1 Kokia drynarioides strain JFW-HI SEQ_117981, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 648

Length: 1081
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.35


Found at i:764 original size:23 final size:24

Alignment explanation


    Indices: 720--769  Score: 68
    Period size: 24  Copynumber: 2.1  Consensus size: 24

        710 ATTTTTATTT

                          *         
        720 TTTTTAATTTATATTTTAACAATA
          1 TTTTTAATTTATATATTAACAATA

                                     
        744 TTTTTAATTTATCA-ATT-ACAATA
          1 TTTTTAATTTAT-ATATTAACAATA

               
        767 TTT
          1 TTT

        770 CTTTTTTTTA


Statistics
Matches: 24,  Mismatches: 1, Indels: 3
        0.86            0.04        0.11

Matches are distributed among these distances:
  23    9  0.38
  24   14  0.58
  25    1  0.04

ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58


Consensus pattern (24 bp):   
TTTTTAATTTATATATTAACAATA
Done.