Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004533.1 Kokia drynarioides strain JFW-HI SEQ_117985, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4198
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.37


Found at i:2087 original size:58 final size:58

Alignment explanation


    Indices: 2024--2143  Score: 179
    Period size: 58  Copynumber: 2.1  Consensus size: 58

       2014 ACTCATCAAC

                    *                                                  
       2024 AAACTAAATCCAAATATTTTTAAACCCAAATATAATTTCATTCTTCAAA-AACACTCAT
          1 AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTCTT-AAATAACACTCAT

                                     *            *            * *    
       2082 AAACTAAACCCAAATATTTTTAAACTCAAATATAATTTTATTCTTAAATAATATTCAT
          1 AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTCTTAAATAACACTCAT

                
       2140 AAAC
          1 AAAC

       2144 AACTCCTTTT


Statistics
Matches: 56,  Mismatches: 5, Indels: 2
        0.89            0.08        0.03

Matches are distributed among these distances:
  57    3  0.05
  58   53  0.95

ACGTcount: A:0.47, C:0.17, G:0.00, T:0.35


Consensus pattern (58 bp):   
AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTCTTAAATAACACTCAT
Done.