Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004536.1 Kokia drynarioides strain JFW-HI SEQ_117988, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1699
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.35


Found at i:150 original size:41 final size:41

Alignment explanation


    Indices: 88--387  Score: 413
    Period size: 41  Copynumber: 7.3  Consensus size: 41

         78 ACTTGACATA

                          *                           
         88 TAAATGGAAGACTCATGTCTCGAGATGAGCATGAGATTATAT
          1 TAAA-GGAAGACTCGTGTCTCGAGATGAGCATGAGATTATAT

                                             *       
        130 TAAAGGAAGACTCGTGTCTCGAGATGAGCATGATATTATAT
          1 TAAAGGAAGACTCGTGTCTCGAGATGAGCATGAGATTATAT

                         *  *     *          *       
        171 TAAAGGAAGACTCATGACTCGAAATGAGCATGAAATTATAT
          1 TAAAGGAAGACTCGTGTCTCGAGATGAGCATGAGATTATAT

                   *        *     *                  
        212 TAAAGGAGGACTCGTGACTCGAAATGAGCATGAGATTATAT
          1 TAAAGGAAGACTCGTGTCTCGAGATGAGCATGAGATTATAT

                                 * *                 
        253 TAAAGGAAGACTCGTGTCTCGGGGTGAGCATGAGATTATAT
          1 TAAAGGAAGACTCGTGTCTCGAGATGAGCATGAGATTATAT

                    *    *         * *             * 
        294 TAAAGGAATACTCATGTCTCG-GGTAAGCATGAGATTATTT
          1 TAAAGGAAGACTCGTGTCTCGAGATGAGCATGAGATTATAT

                            *    *                    
        334 TAAAGGAAGACTCGTGACTCGGGATGAGCATGAGATTATATT
          1 TAAAGGAAGACTCGTGTCTCGAGATGAGCATGAGATTATA-T

                        
        376 TAAAGGAAGACT
          1 TAAAGGAAGACT

        388 TATGACTCGA


Statistics
Matches: 232,  Mismatches: 24, Indels: 4
        0.89            0.09        0.02

Matches are distributed among these distances:
  40   35  0.15
  41  180  0.78
  42   17  0.07

ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27


Consensus pattern (41 bp):   
TAAAGGAAGACTCGTGTCTCGAGATGAGCATGAGATTATAT

Done.