Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004537.1 Kokia drynarioides strain JFW-HI SEQ_117995, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 860

Length: 1434
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.33


Found at i:225 original size:3 final size:3

Alignment explanation


    Indices: 217--243  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

        207 ATCATTATTT

                                               
        217 TTC TTC TTC TTC TTC TTC TTC TTC TTC
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC

        244 AATCTTTGGC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67


Consensus pattern (3 bp):   
TTC

Found at i:533 original size:23 final size:23

Alignment explanation


    Indices: 507--553  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        497 ATTTAAGTTG

                                   
        507 AATATTATGATTGAAAAATATGA
          1 AATATTATGATTGAAAAATATGA

                                   
        530 AATATTATGATTGAAAAATATGA
          1 AATATTATGATTGAAAAATATGA

             
        553 A
          1 A

        554 GTATATGGAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.53, C:0.00, G:0.13, T:0.34


Consensus pattern (23 bp):   
AATATTATGATTGAAAAATATGA
Done.