Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004539.1 Kokia drynarioides strain JFW-HI SEQ_117998, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 755

Length: 1259
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28


Found at i:784 original size:20 final size:20

Alignment explanation


    Indices: 759--800  Score: 84
    Period size: 20  Copynumber: 2.1  Consensus size: 20

        749 TGTTAGATCC

                                
        759 TTCAACTCATAAAGTCTATG
          1 TTCAACTCATAAAGTCTATG

                                
        779 TTCAACTCATAAAGTCTATG
          1 TTCAACTCATAAAGTCTATG

              
        799 TT
          1 TT

        801 AGCAGGGATG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   22  1.00

ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38


Consensus pattern (20 bp):   
TTCAACTCATAAAGTCTATG
Done.