genome.fa.s4540.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004540.1 Kokia drynarioides strain JFW-HI SEQ_117999, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  217929

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3050--3569	60	8.6	61	80	8	422	25	18	15	40	1.90
3960--4087	30	4.1	30	74	13	98	60	3	7	28	1.39
3989--4017	12	2.3	13	94	5	51	65	0	3	31	1.09
3960--4053	36	2.6	36	84	1	107	60	2	7	29	1.36
4551--4607	12	4.8	12	82	0	60	7	35	33	24	1.82
4552--4616	24	2.7	24	74	9	60	7	33	32	26	1.85
5231--5255	13	1.9	13	100	0	50	56	0	12	32	1.36
5561--5939	60	6.2	60	80	8	329	39	15	17	27	1.91
5561--5974	123	3.4	120	78	9	380	38	15	18	27	1.91
5561--5974	61	6.9	60	78	7	283	38	15	18	27	1.91
6949--6999	15	3.5	14	80	19	52	47	3	1	47	1.32
9628--9707	40	2.0	40	100	0	160	45	12	12	30	1.79
10642--10669	2	14.0	2	100	0	56	50	0	0	50	1.00
14617--14644	7	4.0	7	100	0	56	71	0	0	28	0.86
15665--15707	21	2.0	21	86	8	61	25	9	2	62	1.37
22281--22319	2	19.5	2	89	0	60	48	46	2	2	1.29
23758--24083	164	2.0	164	92	2	539	33	19	14	33	1.91
44892--45059	85	2.0	85	98	0	327	40	20	9	29	1.84
47941--48134	95	2.0	95	100	0	388	40	7	6	45	1.58
47981--48127	46	3.1	46	61	16	111	40	6	6	46	1.53
55110--55139	3	10.0	3	100	0	60	66	0	0	33	0.92
59972--60015	3	14.7	3	100	0	88	65	0	34	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60025--60080	29	1.9	29	100	0	112	28	8	37	25	1.86
61428--61495	21	3.3	21	79	8	77	19	4	13	63	1.46
61432--61504	20	3.6	20	78	10	69	21	5	12	60	1.52
61888--61927	18	2.3	18	86	4	55	80	0	17	2	0.83
63289--63337	22	2.2	22	100	0	98	26	28	14	30	1.95
81744--81770	7	3.9	7	100	0	54	88	0	0	11	0.50
83982--84031	19	2.6	20	75	9	59	24	4	0	72	1.02
92492--92557	36	1.9	36	90	9	111	39	0	3	57	1.14
92519--92567	24	2.0	24	81	14	57	34	0	4	61	1.15
92869--92893	3	8.3	3	100	0	50	32	0	0	68	0.90
109219--109307	38	2.3	39	81	12	105	53	5	0	40	1.24
111058--111117	28	2.0	31	84	15	83	28	10	18	43	1.82
111946--112179	116	2.0	116	100	0	468	36	16	17	29	1.92
115737--115825	45	2.0	45	84	4	117	43	10	31	14	1.79
117598--117632	16	2.2	16	89	0	52	54	0	2	42	1.15
118439--118463	12	2.1	12	100	0	50	44	8	24	24	1.80
128941--128982	16	2.6	16	82	14	50	19	9	2	69	1.28
131879--131921	18	2.4	18	80	7	52	48	0	0	51	1.00
136857--136914	23	2.4	26	78	18	63	22	5	3	68	1.24
143017--143059	16	2.8	16	80	16	54	53	0	4	41	1.21
146318--146381	20	3.2	20	89	8	96	39	0	4	56	1.20
146664--146971	109	2.8	110	79	5	313	27	14	25	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162216--162259	23	1.9	23	86	9	63	50	2	11	36	1.51
169878--169921	17	2.5	17	82	13	54	36	2	0	61	1.09
171639--171673	8	4.2	8	92	3	52	60	0	40	0	0.97
180821--180858	17	2.3	17	86	4	51	26	5	2	65	1.27
189873--189901	13	2.3	13	94	5	51	62	0	0	37	0.96
194545--194736	95	2.0	95	100	0	384	42	12	16	28	1.84
204089--204433	172	2.0	172	100	0	690	27	13	20	37	1.91
205588--205612	3	8.3	3	100	0	50	0	32	32	36	1.58
209486--209548	31	2.1	30	82	5	74	52	7	11	28	1.65
213460--213484	3	8.3	3	100	0	50	32	0	32	36	1.58

Tables:   1

The End!