Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000455.1 Kokia drynarioides strain JFW-HI SEQ_111315, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 991

Length: 1652
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33

Warning! 7 characters in sequence are not A, C, G, or T


Found at i:1127 original size:23 final size:23

Alignment explanation


    Indices: 1097--1245  Score: 175
    Period size: 23  Copynumber: 6.5  Consensus size: 23

       1087 GAACGCTAGC

                                     
       1097 GTGCTTACTG-TTCAGCACTGT-GT
          1 GTGCTTACTGTTTC-GCACT-TCGT

                                   
       1120 GTGCTTACTGTTTCGCACTTCGT
          1 GTGCTTACTGTTTCGCACTTCGT

                                   
       1143 GTGCTTACTGTTTCGCACTTCGT
          1 GTGCTTACTGTTTCGCACTTCGT

                *                  
       1166 GTGCCTACTGTTTCGCACTTCGT
          1 GTGCTTACTGTTTCGCACTTCGT

                *     *             
       1189 GTGCCTACTGATT-GCACTGT-GT
          1 GTGCTTACTGTTTCGCACT-TCGT

                       *             
       1211 GTGCTTACTGGATT-GCACTGT-GT
          1 GTGCTTACT-GTTTCGCACT-TCGT

                        
       1234 GTGCTTACTGTT
          1 GTGCTTACTGTT

       1246 AAGTACTTCG


Statistics
Matches: 118,  Mismatches: 4, Indels: 9
        0.90            0.03        0.07

Matches are distributed among these distances:
  22   18  0.15
  23   97  0.82
  24    3  0.03

ACGTcount: A:0.11, C:0.23, G:0.25, T:0.41


Consensus pattern (23 bp):   
GTGCTTACTGTTTCGCACTTCGT

Done.