Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004556.1 Kokia drynarioides strain JFW-HI SEQ_118031, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3282
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37


Found at i:2396 original size:15 final size:14

Alignment explanation


    Indices: 2373--2433  Score: 59
    Period size: 15  Copynumber: 4.1  Consensus size: 14

       2363 TGTGAAAGTT

                          
       2373 TTTTAAAAATAAAA
          1 TTTTAAAAATAAAA

                       *   
       2387 TTTTATAAAATTAAA
          1 TTTTA-AAAATAAAA

             *              
       2402 TCTTAAAAATAATTAA
          1 TTTTAAAAATAA--AA

                     *     
       2418 TTTTAATAACTAAAA
          1 TTTTAA-AAATAAAA

             
       2433 T
          1 T

       2434 AAATAGGATT


Statistics
Matches: 38,  Mismatches: 5, Indels: 7
        0.76            0.10        0.14

Matches are distributed among these distances:
  14   11  0.29
  15   15  0.39
  16    7  0.18
  17    5  0.13

ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41


Consensus pattern (14 bp):   
TTTTAAAAATAAAA
Done.