Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004566.1 Kokia drynarioides strain JFW-HI SEQ_118048, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 25148
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34


Found at i:5256 original size:2 final size:2

Alignment explanation


    Indices: 5249--5278  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

       5239 TTAAAATTTG

                                                        
       5249 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       5279 TAATAAATGA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:24490 original size:25 final size:25

Alignment explanation


    Indices: 24462--24514  Score: 106
    Period size: 25  Copynumber: 2.1  Consensus size: 25

      24452 TTGGAACAGT

                                     
      24462 AATGTTAAACTACTAGTATGGATAC
          1 AATGTTAAACTACTAGTATGGATAC

                                     
      24487 AATGTTAAACTACTAGTATGGATAC
          1 AATGTTAAACTACTAGTATGGATAC

               
      24512 AAT
          1 AAT

      24515 CACGTGTAAC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   28  1.00

ACGTcount: A:0.42, C:0.11, G:0.15, T:0.32


Consensus pattern (25 bp):   
AATGTTAAACTACTAGTATGGATAC
Done.