Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004567.1 Kokia drynarioides strain JFW-HI SEQ_118050, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4104
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35


Found at i:1525 original size:139 final size:140

Alignment explanation


    Indices: 1275--1546  Score: 465
    Period size: 139  Copynumber: 1.9  Consensus size: 140

       1265 AAATACAAAT

                              *             *                                
       1275 AAAAGAAGAAAAAATTGCCACTCCACTGCTCGTAATTACTGAGTACGTCGGCAGCACTTTGTTTG
          1 AAAAGAAGAAAAAATTGCAACTCCACTGCTCGGAATTACTGAGTACGTCGGCAGCACTTTGTTTG

                                                                   *    *    
       1340 CTCCATCGTGTTGTTGATGAGAAAAGTGAATCTAAGTAAGAGTGTTTTGTAAAA-GAAAATAAAA
         66 CTCCATCGTGTTGTTGATGAGAAAAGTGAATCTAAGTAAGAGTGTTTTGTAAAATAAAAACAAAA

                      
       1404 GAAAAACAGA
        131 GAAAAACAGA

                        *                 *                    *             
       1414 AAAAGAAGAAAACATTGCAACTCCACTGCTTGGAATTACTGAGTACGTCGGTAGCACTTTGTTTG
          1 AAAAGAAGAAAAAATTGCAACTCCACTGCTCGGAATTACTGAGTACGTCGGCAGCACTTTGTTTG

                                    *                                        
       1479 CTCCATCGTGTTGTTGATGAGAAATGTGAATCTAAGTAAGAGTGTTTTGTAAAATAAAAACAAAA
         66 CTCCATCGTGTTGTTGATGAGAAAAGTGAATCTAAGTAAGAGTGTTTTGTAAAATAAAAACAAAA

               
       1544 GAA
        131 GAA

       1547 GAAAATTTTA


Statistics
Matches: 124,  Mismatches: 8, Indels: 1
        0.93            0.06        0.01

Matches are distributed among these distances:
 139  113  0.91
 140   11  0.09

ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27


Consensus pattern (140 bp):   
AAAAGAAGAAAAAATTGCAACTCCACTGCTCGGAATTACTGAGTACGTCGGCAGCACTTTGTTTG
CTCCATCGTGTTGTTGATGAGAAAAGTGAATCTAAGTAAGAGTGTTTTGTAAAATAAAAACAAAA
GAAAAACAGA
Done.