Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01004568.1 Kokia drynarioides strain JFW-HI SEQ_118051, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 248876
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Warning! 53 characters in sequence are not A, C, G, or T
Found at i:805 original size:25 final size:23
Alignment explanation
Indices: 768--917 Score: 106
Period size: 23 Copynumber: 6.4 Consensus size: 23
758 ACATTAGCAC
768 GCTCTCTGTTTAGCAC-GTCTCGT
1 GCTCTCTGTTTAGCACTGTCT-GT
*
791 GCTCTCTGTTATTAGCACTGTGTGT
1 GCTCTCTG-T-TTAGCACTGTCTGT
* * * *
816 GCTCTCTGATTAGTACTTTGTGT
1 GCTCTCTGTTTAGCACTGTCTGT
* * * *
839 GCTCTCTGATTAGTACTTTGTGT
1 GCTCTCTGTTTAGCACTGTCTGT
* * * * *
862 GCTCTCTGATTAGTATTTTGTGT
1 GCTCTCTGTTTAGCACTGTCTGT
* *
885 ACTCTCT-TTCTAGCACTGTGTGT
1 GCTCTCTGTT-TAGCACTGTCTGT
908 GCTCTCTGTT
1 GCTCTCTGTT
918 GCCCAGCACC
Statistics
Matches: 111, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
22 1 0.01
23 87 0.78
24 3 0.03
25 17 0.15
26 3 0.03
ACGTcount: A:0.11, C:0.21, G:0.21, T:0.46
Consensus pattern (23 bp):
GCTCTCTGTTTAGCACTGTCTGT
Found at i:868 original size:46 final size:46
Alignment explanation
Indices: 789--915 Score: 175
Period size: 46 Copynumber: 2.7 Consensus size: 46
779 AGCACGTCTC
789 GTGCTCTCTGTTATTAGCACTGTGTGTGCTCTCTGATTAGTACTTTGT
1 GTGCTCTCTG--ATTAGCACTGTGTGTGCTCTCTGATTAGTACTTTGT
* * *
837 GTGCTCTCTGATTAGTACTTTGTGTGCTCTCTGATTAGTATTTTGT
1 GTGCTCTCTGATTAGCACTGTGTGTGCTCTCTGATTAGTACTTTGT
* *
883 GTACTCTCT-TTCTAGCACTGTGTGTGCTCTCTG
1 GTGCTCTCTGAT-TAGCACTGTGTGTGCTCTCTG
916 TTGCCCAGCA
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
45 1 0.01
46 60 0.85
48 10 0.14
ACGTcount: A:0.12, C:0.20, G:0.22, T:0.46
Consensus pattern (46 bp):
GTGCTCTCTGATTAGCACTGTGTGTGCTCTCTGATTAGTACTTTGT
Found at i:1705 original size:20 final size:20
Alignment explanation
Indices: 1680--1731 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
1670 AGTCTTCAAG
*
1680 GTATCGGTAGAACTGTAGTT
1 GTATCGGTAGAACTGGAGTT
*
1700 GTATCGGTAGAAGTGGAGTT
1 GTATCGGTAGAACTGGAGTT
* *
1720 TTACCGGTAGAA
1 GTATCGGTAGAA
1732 GTCTCAGGCC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.27, C:0.10, G:0.33, T:0.31
Consensus pattern (20 bp):
GTATCGGTAGAACTGGAGTT
Found at i:5490 original size:58 final size:58
Alignment explanation
Indices: 5425--5542 Score: 209
Period size: 58 Copynumber: 2.0 Consensus size: 58
5415 TAATTGTGTA
* *
5425 TTGATTTCGGTTTTTGTATGTTTTGAGAGATTTCACGTGAATACGCTTTGCAAATATG
1 TTGATTTCGATTTTTGTATGTTTTGAGAGATTTCACGTGAATACACTTTGCAAATATG
*
5483 TTGATTTCGATTTTTGTATGTTTTGAGAGATTTCACGTGAATATACTTTGCAAATATG
1 TTGATTTCGATTTTTGTATGTTTTGAGAGATTTCACGTGAATACACTTTGCAAATATG
5541 TT
1 TT
5543 AAGTATTATA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.24, C:0.09, G:0.20, T:0.47
Consensus pattern (58 bp):
TTGATTTCGATTTTTGTATGTTTTGAGAGATTTCACGTGAATACACTTTGCAAATATG
Found at i:13896 original size:72 final size:71
Alignment explanation
Indices: 13733--13912 Score: 252
Period size: 72 Copynumber: 2.5 Consensus size: 71
13723 GTTAAACTAA
* *
13733 TTTTATCAATAGTTGTTTATGTTTGGTTTTTGAATATTGAATTTATGTTATACTTATTTATGTGT
1 TTTTATCAATAGTTGTTTATGTTT-GTTTTTGGATATTGAAATTATGTTATACTTATTTATGTGT
13798 AATCTAG
65 AATCTAG
* * * *
13805 TTTTAACAATAATTGTTTATGTTTAGTTTTTGGATATTGAAATTATGTTCTACTTATTTATTTGT
1 TTTTATCAATAGTTGTTTATGTTT-GTTTTTGGATATTGAAATTATGTTATACTTATTTATGTGT
13870 AATCTAG
65 AATCTAG
* * * *
13877 TTTTATTAATAGTTTTTTATATTTGATTTTGGATAT
1 TTTTATCAATAGTTGTTTATGTTTGTTTTTGGATAT
13913 AAAATTTGTT
Statistics
Matches: 95, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
71 11 0.12
72 84 0.88
ACGTcount: A:0.26, C:0.04, G:0.13, T:0.57
Consensus pattern (71 bp):
TTTTATCAATAGTTGTTTATGTTTGTTTTTGGATATTGAAATTATGTTATACTTATTTATGTGTA
ATCTAG
Found at i:14282 original size:101 final size:101
Alignment explanation
Indices: 14105--14298 Score: 370
Period size: 101 Copynumber: 1.9 Consensus size: 101
14095 AAACAATTAG
14105 GTGAGGCATGGATCTGAGAGATCCTTGACGATCATGAATCACATTGTATGATTAATTTTAGGATA
1 GTGAGGCATGGATCTGAGAGATCCTTGACGATCATGAATCACATTGTATGATTAATTTTAGGATA
14170 TCTAAAATTGTATTCACAAGTTTTTTGAACAGTCAA
66 TCTAAAATTGTATTCACAAGTTTTTTGAACAGTCAA
*
14206 GTGAGGCATGGATCTGAGAGATCCTTGACGATCATGAATCATATTGTATGATTAATTTTAGGATA
1 GTGAGGCATGGATCTGAGAGATCCTTGACGATCATGAATCACATTGTATGATTAATTTTAGGATA
*
14271 TCTAAATTTGTATTCACAAGTTTTTTGA
66 TCTAAAATTGTATTCACAAGTTTTTTGA
14299 GAGTTTTGAA
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
101 91 1.00
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (101 bp):
GTGAGGCATGGATCTGAGAGATCCTTGACGATCATGAATCACATTGTATGATTAATTTTAGGATA
TCTAAAATTGTATTCACAAGTTTTTTGAACAGTCAA
Found at i:17906 original size:20 final size:20
Alignment explanation
Indices: 17869--17925 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 20
17859 TTTTCCCATA
*
17869 AAAAAAATATTTATAAAAACAG
1 AAAAAATTA-TTA-AAAAACAG
** *
17891 AAAAAATTATTAAAAAGTAT
1 AAAAAATTATTAAAAAACAG
*
17911 ACAAAATTATTAAAA
1 AAAAAATTATTAAAA
17926 TTTTAAAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
20 19 0.63
21 3 0.10
22 8 0.27
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.26
Consensus pattern (20 bp):
AAAAAATTATTAAAAAACAG
Found at i:17981 original size:10 final size:9
Alignment explanation
Indices: 17892--17983 Score: 55
Period size: 9 Copynumber: 9.9 Consensus size: 9
17882 TAAAAACAGA
17892 AAAAATTATT
1 AAAAATTA-T
*
17902 AAAAAGTAT
1 AAAAATTAT
17911 ACAAAATTAT
1 A-AAAATTAT
* *
17921 TAAAATTTT
1 AAAAATTAT
17930 AAAAA-TATT
1 AAAAATTA-T
*
17939 AACAA-TAT
1 AAAAATTAT
*
17947 -GAAATTGAT
1 AAAAATT-AT
*
17956 ATAAACTTAT
1 A-AAAATTAT
17966 AAAAATTAT
1 AAAAATTAT
17975 CAAAAATTA
1 -AAAAATTA
17984 CCACCAATAT
Statistics
Matches: 63, Mismatches: 12, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
7 2 0.03
8 3 0.05
9 29 0.46
10 25 0.40
11 4 0.06
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:30651 original size:19 final size:20
Alignment explanation
Indices: 30629--30669 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
30619 GGATAAAAAT
30629 AAAT-AAATAAACTAAATAC
1 AAATGAAATAAACTAAATAC
* *
30648 AAATGAATTAACCTAAATAC
1 AAATGAAATAAACTAAATAC
30668 AA
1 AA
30670 TGGAATGGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.63, C:0.12, G:0.02, T:0.22
Consensus pattern (20 bp):
AAATGAAATAAACTAAATAC
Found at i:39487 original size:23 final size:23
Alignment explanation
Indices: 39461--39504 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
39451 GTATAATACA
*
39461 AATACAATTACAGATACAAATAT
1 AATACAAATACAGATACAAATAT
* *
39484 AATACAAATATAGTTACAAAT
1 AATACAAATACAGATACAAAT
39505 GCAGACATGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.27
Consensus pattern (23 bp):
AATACAAATACAGATACAAATAT
Found at i:39500 original size:29 final size:29
Alignment explanation
Indices: 39433--39501 Score: 102
Period size: 29 Copynumber: 2.4 Consensus size: 29
39423 CCAAGTATAG
* *
39433 ATATAGTTACAGATGCAAGTATAATACAA
1 ATATAGTTACAGATACAAATATAATACAA
* *
39462 ATACAATTACAGATACAAATATAATACAA
1 ATATAGTTACAGATACAAATATAATACAA
39491 ATATAGTTACA
1 ATATAGTTACA
39502 AATGCAGACA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.52, C:0.12, G:0.09, T:0.28
Consensus pattern (29 bp):
ATATAGTTACAGATACAAATATAATACAA
Found at i:44543 original size:29 final size:29
Alignment explanation
Indices: 44478--44548 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
44468 ACAGATATAG
* * *
44478 TTACAGATGCAGGTATAATGCAGACGCAG
1 TTACAGATGCAGATATAATGCAGACACAA
*
44507 TTACAGATGCAGATATAATGCAGATACAA
1 TTACAGATGCAGATATAATGCAGACACAA
*
44536 TTATAGATGCAGA
1 TTACAGATGCAGA
44549 CATGATACCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (29 bp):
TTACAGATGCAGATATAATGCAGACACAA
Found at i:46410 original size:35 final size:35
Alignment explanation
Indices: 46370--46439 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
46360 AATATGAAGA
46370 AAGAACTCATTTCTTTATATAAATTAACCACACAG
1 AAGAACTCATTTCTTTATATAAATTAACCACACAG
46405 AAGAACTCATTTCTTTATATAAATTAACCACACAG
1 AAGAACTCATTTCTTTATATAAATTAACCACACAG
46440 CTATAGGCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.31
Consensus pattern (35 bp):
AAGAACTCATTTCTTTATATAAATTAACCACACAG
Found at i:56603 original size:18 final size:18
Alignment explanation
Indices: 56580--56614 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
56570 GCATGATATA
*
56580 AATTATTTCATGGACATG
1 AATTATTTCATGCACATG
56598 AATTATTTCATGCACAT
1 AATTATTTCATGCACAT
56615 TGGCTGCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.40
Consensus pattern (18 bp):
AATTATTTCATGCACATG
Found at i:62323 original size:18 final size:18
Alignment explanation
Indices: 62300--62334 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
62290 GCATGATATA
*
62300 AATTATTTCATGGACATG
1 AATTATTTCATGCACATG
62318 AATTATTTCATGCACAT
1 AATTATTTCATGCACAT
62335 TAGACGGCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.40
Consensus pattern (18 bp):
AATTATTTCATGCACATG
Found at i:70406 original size:20 final size:20
Alignment explanation
Indices: 70381--70428 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
70371 CTACCTTAGG
*
70381 ACTTCTAC-AAGTATAACTTC
1 ACTTCTACGAA-TACAACTTC
70401 ACTTCTACGAATACAACTTC
1 ACTTCTACGAATACAACTTC
*
70421 AGTTCTAC
1 ACTTCTAC
70429 CGATATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.33
Consensus pattern (20 bp):
ACTTCTACGAATACAACTTC
Found at i:72260 original size:19 final size:19
Alignment explanation
Indices: 72236--72273 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
72226 GGCAAAGAAA
72236 GAATAAAATTTACTAAGGC
1 GAATAAAATTTACTAAGGC
72255 GAATAAAATTTACTAAGGC
1 GAATAAAATTTACTAAGGC
72274 ATTGCCTCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26
Consensus pattern (19 bp):
GAATAAAATTTACTAAGGC
Found at i:75053 original size:2 final size:2
Alignment explanation
Indices: 75046--75090 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
75036 AAGTATAATT
75046 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
75088 TA T
1 TA T
75091 TTACTCTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:82473 original size:132 final size:134
Alignment explanation
Indices: 82259--82517 Score: 371
Period size: 133 Copynumber: 1.9 Consensus size: 134
82249 TATCAAAAAA
* * *
82259 TAATTAACTCAAGATTATTTTTTAAATATTAATTTTTTATTTTTAATTTATATTAATGATAATAT
1 TAATTAACTCAAGATTATATTTTAAATATTAATTTTTTATTTTTAACTTATATTAATGATAATAC
* * * *
82324 AAGGTATAAATATTTT-AAAATTAAATATTTATTTTATATTATTTTTACTTTCTCAATCATACAA
66 AAGGTATAAACATTTTAAAAATTAAAAATTTATATTATATTATTTTCACTTTCTCAATCATACAA
82388 AATG
131 AATG
* * * *
82392 TAATTAATTCAAG-TT-TATTTTAAATATTATTTTTTTATTCTTTAACTTATATTGATGATAGTA
1 TAATTAACTCAAGATTATATTTTAAATATTAATTTTTTATT-TTTAACTTATATTAATGATAATA
* *
82455 CAAGGTATAAACATTTTAAAAATTAAAAATTTATATTATTTTGTTTTCACTTTCTCAATCATA
65 CAAGGTATAAACATTTTAAAAATTAAAAATTTATATTATATTATTTTCACTTTCTCAATCATA
82518 GAATTTTTTT
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
131 22 0.20
132 37 0.33
133 52 0.47
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.51
Consensus pattern (134 bp):
TAATTAACTCAAGATTATATTTTAAATATTAATTTTTTATTTTTAACTTATATTAATGATAATAC
AAGGTATAAACATTTTAAAAATTAAAAATTTATATTATATTATTTTCACTTTCTCAATCATACAA
AATG
Found at i:88636 original size:207 final size:205
Alignment explanation
Indices: 88265--88658 Score: 655
Period size: 207 Copynumber: 1.9 Consensus size: 205
88255 ATAATCGAAT
* * *
88265 CATCTCCTCTTCTAAAAGGGAAATTTCATTACCCTCCATCTAAGCGAAGTCACCACTTCTCCCAA
1 CATCTCCTCTACCAAAAGGGAAATTTCATCACCCTCCATCTAAGCGAAGTCACCACTTCTCCCAA
* *
88330 ACCTTAATCATAGTAAAACCTATTTTTTTACATATCAACAATCATAGTATTTCTAAAATGTTATA
66 ACCTTAATCACAGCAAAACCTATTTTTTTACATATCAACAATCATAGTATTTCTAAAATGTTATA
*
88395 ATTGTATAAAAGATTTTAAGAAATAAATATAATATAAGGTAAGCTATATAAGTAGTTGATAATCG
131 ATTGTATAAAAGATTTTAAGAAATAAATATAATATAAGGTAAGCTATATAAATAGTTGATAATCG
88460 ATAATCAGAC
196 ATAATCAGAC
* *
88470 CATCTCCTCTACCAAAAGGGAAATTTCATCACCCTCCATCTAAGTGAAGTCACCACTTCTCTCAA
1 CATCTCCTCTACCAAAAGGGAAATTTCATCACCCTCCATCTAAGCGAAGTCACCACTTCTCCCAA
*
88535 A-CTCTAATCACAGCAAAACCCTTTTTTTTTTACATATCAACAATCATAGTATTTCTAAAATGTT
66 ACCT-TAATCACAGCAAAA-CC-TATTTTTTTACATATCAACAATCATAGTATTTCTAAAATGTT
* *
88599 ATAATTGTGTAAAATATTTTAAGAAATAAATATAATATAAGGTAAGCTATATAAATAGTT
128 ATAATTGTATAAAAGATTTTAAGAAATAAATATAATATAAGGTAAGCTATATAAATAGTT
88659 ATCCAACTAT
Statistics
Matches: 175, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
204 2 0.01
205 73 0.42
206 2 0.01
207 98 0.56
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (205 bp):
CATCTCCTCTACCAAAAGGGAAATTTCATCACCCTCCATCTAAGCGAAGTCACCACTTCTCCCAA
ACCTTAATCACAGCAAAACCTATTTTTTTACATATCAACAATCATAGTATTTCTAAAATGTTATA
ATTGTATAAAAGATTTTAAGAAATAAATATAATATAAGGTAAGCTATATAAATAGTTGATAATCG
ATAATCAGAC
Found at i:104050 original size:15 final size:16
Alignment explanation
Indices: 104023--104052 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
104013 GTAATAAAAA
104023 ATATTTTTAATATTAT
1 ATATTTTTAATATTAT
104039 ATATTTTT-ATATTA
1 ATATTTTTAATATTA
104053 AAATACTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
ATATTTTTAATATTAT
Found at i:106604 original size:16 final size:16
Alignment explanation
Indices: 106585--106615 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
106575 CTATTTATTC
106585 ATTTGACCATTTCCCT
1 ATTTGACCATTTCCCT
106601 ATTTGACCATTTCCC
1 ATTTGACCATTTCCC
106616 CCCCTAACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTTGACCATTTCCCT
Found at i:108195 original size:35 final size:35
Alignment explanation
Indices: 108156--108222 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
108146 TATATATTAT
*
108156 ATATTAGTGAGTTGTTTTTTTAAGAGTGGGTACTG
1 ATATTAGTGAGTTGGTTTTTTAAGAGTGGGTACTG
* *
108191 ATATTAGTGGGTTGGTTTTTTAAGCGTGGGTA
1 ATATTAGTGAGTTGGTTTTTTAAGAGTGGGTA
108223 GTTTTTTCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.21, C:0.03, G:0.31, T:0.45
Consensus pattern (35 bp):
ATATTAGTGAGTTGGTTTTTTAAGAGTGGGTACTG
Found at i:109409 original size:17 final size:19
Alignment explanation
Indices: 109368--109411 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
109358 CTTCCTCTCT
109368 TCTTTTCAAGTCTTTTTCA
1 TCTTTTCAAGTCTTTTTCA
* *
109387 TTTTTTCAAGT-TTTTTGA
1 TCTTTTCAAGTCTTTTTCA
109405 -CTTTTCA
1 TCTTTTCA
109412 TTTTTAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 6 0.27
18 6 0.27
19 10 0.45
ACGTcount: A:0.16, C:0.16, G:0.07, T:0.61
Consensus pattern (19 bp):
TCTTTTCAAGTCTTTTTCA
Found at i:109464 original size:15 final size:17
Alignment explanation
Indices: 109439--109482 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 17
109429 TCATGAGAAG
*
109439 TCTTTATTTTTC-TCTT
1 TCTTTAATTTTCTTCTT
109455 T-TTTAATTTTCTTCTT
1 TCTTTAATTTTCTTCTT
109471 TCTTTAAGTTTT
1 TCTTTAA-TTTT
109483 TTTCATGCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 9 0.38
16 6 0.25
17 5 0.21
18 4 0.17
ACGTcount: A:0.11, C:0.14, G:0.02, T:0.73
Consensus pattern (17 bp):
TCTTTAATTTTCTTCTT
Found at i:110347 original size:23 final size:23
Alignment explanation
Indices: 110299--110344 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
110289 TTAACAATTT
* **
110299 TAATATTAAAATAAATTATTTAA
1 TAATATTAAAATAAATAACCTAA
110322 TAATATATAAAATAAATAACCTA
1 TAATAT-TAAAATAAATAACCTA
110345 TAAGAAATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (23 bp):
TAATATTAAAATAAATAACCTAA
Found at i:110434 original size:31 final size:30
Alignment explanation
Indices: 110396--110473 Score: 93
Period size: 30 Copynumber: 2.6 Consensus size: 30
110386 TTAATATAAT
* * *
110396 ATTTGGTACCTAAATTTGATACTTTTTTCTA
1 ATTTGGTACATAAACTTGACA-TTTTTTCTA
*
110427 ATTTGGTACATAAACTTGACATTTTTTTTA
1 ATTTGGTACATAAACTTGACATTTTTTCTA
* *
110457 AGTTGGTACTTAAACTT
1 ATTTGGTACATAAACTT
110474 TTGGGGGTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
30 23 0.56
31 18 0.44
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.49
Consensus pattern (30 bp):
ATTTGGTACATAAACTTGACATTTTTTCTA
Found at i:110745 original size:30 final size:29
Alignment explanation
Indices: 110711--110850 Score: 103
Period size: 30 Copynumber: 4.8 Consensus size: 29
110701 AAAAAAAAGC
110711 TTAGGTACCAAATTAGGAAAAATGCTAAGT
1 TTAGGTACCAAATTAGGAAAAATG-TAAGT
* *
110741 TTAGGTACCAAATTGGGTTTAAAAA-AT-A-T
1 TTAGGTACCAAATTAGG---AAAAATGTAAGT
*
110770 TTAGGTACCAAATTAAGAAAAAATGTAAAGT
1 TTAGGTACCAAATT-AGGAAAAATGT-AAGT
* *
110801 TTAAGTACCAAATTGGGTCAAAAA--T-AGT
1 TTAGGTACCAAATTAGG--AAAAATGTAAGT
* *
110829 TTAGATAGCAAATTAGGAAAAA
1 TTAGGTACCAAATTAGGAAAAA
110851 GTATCAAGTT
Statistics
Matches: 88, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
26 5 0.06
27 5 0.06
28 17 0.19
29 15 0.17
30 21 0.24
31 15 0.17
32 5 0.06
33 5 0.06
ACGTcount: A:0.46, C:0.08, G:0.18, T:0.28
Consensus pattern (29 bp):
TTAGGTACCAAATTAGGAAAAATGTAAGT
Found at i:110790 original size:59 final size:58
Alignment explanation
Indices: 110701--110850 Score: 187
Period size: 60 Copynumber: 2.6 Consensus size: 58
110691 GAATCTAAAA
* * *
110701 AAAAAAAAGCTTAGGTACCAAATTAGGAAAAATGCT-AAGTTTAGGTACCAAATTGGGTTT
1 AAAAAATAGTTTAGGTACCAAATTAGGAAAAATG-TAAAGTTTAAGTACCAAATTGGG--T
*
110761 AAAAAATA-TTTAGGTACCAAATTAAGAAAAAATGTAAAGTTTAAGTACCAAATTGGGT
1 AAAAAATAGTTTAGGTACCAAATT-AGGAAAAATGTAAAGTTTAAGTACCAAATTGGGT
* * *
110819 CAAAAATAGTTTAGATAGCAAATTAGGAAAAA
1 AAAAAATAGTTTAGGTACCAAATTAGGAAAAA
110851 GTATCAAGTT
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
58 15 0.19
59 28 0.35
60 36 0.46
ACGTcount: A:0.49, C:0.08, G:0.17, T:0.26
Consensus pattern (58 bp):
AAAAAATAGTTTAGGTACCAAATTAGGAAAAATGTAAAGTTTAAGTACCAAATTGGGT
Found at i:110860 original size:59 final size:57
Alignment explanation
Indices: 110711--110860 Score: 158
Period size: 59 Copynumber: 2.5 Consensus size: 57
110701 AAAAAAAAGC
* * *
110711 TTAGGTACCAAATTAGGAAAAATGCTAAGTTTAGGTACCAAATTGGGTTTAAAAAATAT
1 TTAGATACCAAATTAGGAAAAATTC-AAGTTTAAGTACCAAATTGGG-TTAAAAAATAT
* * * *
110770 TTAGGTACCAAATTAAGAAAAAATGTAAAGTTTAAGTACCAAATTGGG-TCAAAAATAGT
1 TTAGATACCAAATT-AGGAAAAAT-TCAAGTTTAAGTACCAAATTGGGTTAAAAAATA-T
*
110829 TTAGATAGCAAATTAGGAAAAAGTATCAAGTT
1 TTAGATACCAAATTAGGAAAAA-T-TCAAGTT
110861 CAGGCACTAA
Statistics
Matches: 77, Mismatches: 10, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
58 15 0.19
59 34 0.44
60 28 0.36
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.29
Consensus pattern (57 bp):
TTAGATACCAAATTAGGAAAAATTCAAGTTTAAGTACCAAATTGGGTTAAAAAATAT
Found at i:119967 original size:30 final size:30
Alignment explanation
Indices: 119929--119998 Score: 115
Period size: 30 Copynumber: 2.4 Consensus size: 30
119919 TTTTGGAGAA
*
119929 TTTT-GTGTTTACGTTTTAAGGGTTCTTTG
1 TTTTCGTGTTTACATTTTAAGGGTTCTTTG
*
119958 TTTTCGTGTTTACATTTTAAGGGTTCTTTT
1 TTTTCGTGTTTACATTTTAAGGGTTCTTTG
119988 TTTTCGTGTTT
1 TTTTCGTGTTT
119999 TCGGGTTTAG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
29 4 0.11
30 34 0.89
ACGTcount: A:0.10, C:0.09, G:0.20, T:0.61
Consensus pattern (30 bp):
TTTTCGTGTTTACATTTTAAGGGTTCTTTG
Found at i:125258 original size:30 final size:30
Alignment explanation
Indices: 125213--125444 Score: 181
Period size: 30 Copynumber: 7.8 Consensus size: 30
125203 GTTTTGATCG
*
125213 TTAAATTTTCCAAAAATTCAAATTTGAACCC
1 TTAAAATTTCCAAAAATTCAAATTTG-ACCC
*
125244 -TAAAATTTCTAAAAATTCAAATTTGACCC
1 TTAAAATTTCCAAAAATTCAAATTTGACCC
* *
125273 TTAAACTTTCTAAAAATTCAAATTTGACCC
1 TTAAAATTTCCAAAAATTCAAATTTGACCC
* ** **
125303 TTGAACCTTCCAAAAATTTGAATTTGACCC
1 TTAAAATTTCCAAAAATTCAAATTTGACCC
* * *
125333 CTAAAATTTCCAAAAAAAT-GAATTTGA-CC
1 TTAAAATTTCC-AAAAATTCAAATTTGACCC
** * *
125362 TCGAATTTTCC-AAAATTCGAATTTGACTCC
1 TTAAAATTTCCAAAAATTCAAATTTGAC-CC
* * *
125392 --AAACTTTCCAAATATTTC-TATTTGACCC
1 TTAAAATTTCCAAA-AATTCAAATTTGACCC
* * *
125420 TTAAAGTTCCCAGAAATTCAAATTT
1 TTAAAATTTCCAAAAATTCAAATTT
125445 AACCTGGTTT
Statistics
Matches: 164, Mismatches: 27, Indels: 21
0.77 0.13 0.10
Matches are distributed among these distances:
27 5 0.03
28 17 0.10
29 26 0.16
30 110 0.67
31 6 0.04
ACGTcount: A:0.39, C:0.20, G:0.06, T:0.35
Consensus pattern (30 bp):
TTAAAATTTCCAAAAATTCAAATTTGACCC
Found at i:131387 original size:59 final size:59
Alignment explanation
Indices: 131295--131415 Score: 233
Period size: 59 Copynumber: 2.1 Consensus size: 59
131285 TCGAATATTT
131295 CGATTCGAAAAAAACATCACCTAGTAAGTTAAGGCTCGACTATTCAAATCATGAAATAA
1 CGATTCGAAAAAAACATCACCTAGTAAGTTAAGGCTCGACTATTCAAATCATGAAATAA
*
131354 CGATTCGAAAAAAACATCACCTAGTAAGTTAAGGCTCGACTCTTCAAATCATGAAATAA
1 CGATTCGAAAAAAACATCACCTAGTAAGTTAAGGCTCGACTATTCAAATCATGAAATAA
131413 CGA
1 CGA
131416 ACATAATTTT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.43, C:0.20, G:0.14, T:0.23
Consensus pattern (59 bp):
CGATTCGAAAAAAACATCACCTAGTAAGTTAAGGCTCGACTATTCAAATCATGAAATAA
Found at i:133195 original size:11 final size:11
Alignment explanation
Indices: 133155--133199 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
133145 AAGGGACATT
133155 AATAAATTT-A
1 AATAAATTTAA
*
133165 AATGAATTTAA
1 AATAAATTTAA
*
133176 ACTTAAATTTAA
1 A-ATAAATTTAA
133188 AATAAATTTAA
1 AATAAATTTAA
133199 A
1 A
133200 TTTCAAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
10 8 0.28
11 12 0.41
12 9 0.31
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (11 bp):
AATAAATTTAA
Found at i:133195 original size:23 final size:22
Alignment explanation
Indices: 133157--133239 Score: 70
Period size: 23 Copynumber: 3.9 Consensus size: 22
133147 GGGACATTAA
*
133157 TAAATTTAAATGAATTTAAACT
1 TAAATTTAAATAAATTTAAACT
133179 TAAATTTAAAATAAATTTAAA--
1 TAAATTT-AAATAAATTTAAACT
*
133200 T---TTCAAATAAATTTAAACT
1 TAAATTTAAATAAATTTAAACT
*
133219 TAAA-ATAAATTTAAATTTAAA
1 TAAATTTAAA--TAAATTTAAA
133240 TTCTGTTTAG
Statistics
Matches: 49, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
17 13 0.27
18 2 0.04
19 1 0.02
21 4 0.08
22 7 0.14
23 22 0.45
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (22 bp):
TAAATTTAAATAAATTTAAACT
Found at i:133198 original size:17 final size:17
Alignment explanation
Indices: 133155--133239 Score: 109
Period size: 17 Copynumber: 5.1 Consensus size: 17
133145 AAGGGACATT
*
133155 AATAAATTTAAA-TGAA
1 AATAAATTTAAATTTAA
** *
133171 TTTAAACTTAAATTTAA
1 AATAAATTTAAATTTAA
*
133188 AATAAATTTAAATTTCA
1 AATAAATTTAAATTTAA
*
133205 AATAAATTTAAACTTAA
1 AATAAATTTAAATTTAA
133222 AATAAATTTAAATTTAA
1 AATAAATTTAAATTTAA
133239 A
1 A
133240 TTCTGTTTAG
Statistics
Matches: 57, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
16 9 0.16
17 48 0.84
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.39
Consensus pattern (17 bp):
AATAAATTTAAATTTAA
Found at i:133207 original size:7 final size:6
Alignment explanation
Indices: 133157--133241 Score: 74
Period size: 6 Copynumber: 15.0 Consensus size: 6
133147 GGGACATTAA
* * *
133157 TAAATT TAAA-- TGAATT TAAACT TAAATT TAAA-A TAAATT TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
* *
133202 TCAAA-- TAAATT TAAACT TAAA-A TAAATT TAAATT TAAATT
1 T-AAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
133242 CTGTTTAGAT
Statistics
Matches: 63, Mismatches: 9, Indels: 14
0.73 0.10 0.16
Matches are distributed among these distances:
4 6 0.10
5 9 0.14
6 45 0.71
7 3 0.05
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (6 bp):
TAAATT
Found at i:133215 original size:40 final size:39
Alignment explanation
Indices: 133157--133241 Score: 118
Period size: 40 Copynumber: 2.2 Consensus size: 39
133147 GGGACATTAA
* *
133157 TAAATTTAAATGAATTTAAACTTAAATTTAAA-ATAAATT
1 TAAATTTAAATAAATTTAAACTTAAA-ATAAATATAAATT
*
133196 TAAATTTCAAATAAATTTAAACTTAAAATAAATTTAAATT
1 TAAATTT-AAATAAATTTAAACTTAAAATAAATATAAATT
133236 TAAATT
1 TAAATT
133242 CTGTTTAGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
39 11 0.27
40 30 0.73
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (39 bp):
TAAATTTAAATAAATTTAAACTTAAAATAAATATAAATT
Found at i:134097 original size:118 final size:117
Alignment explanation
Indices: 133955--134179 Score: 290
Period size: 118 Copynumber: 1.9 Consensus size: 117
133945 CTAGGCTCAG
* *
133955 GGTAAAAGATCGGATGACTGCAATCTGCCCCTA-GCTCAGAGTAAGAGATTGATTGATGGTGATT
1 GGTAAAAGATCAGATGACTGCAATCTGCCCC-AGGCTCAGAGTAAGAGATTGACTGATGGTGATT
* * * *
134019 TGCCCTAGGCTCGGGGGTAAAAAATCGGATGACTGTGATCTGCCCCATGATCGA
65 TACCCCAAGCTC-GGGGTAAAAAATCGGATGACTGTAATCTGCCCCATGATCGA
* ** * * * *
134073 GGTAAGAGATCAGATGGTTGCAATCTGCCCCAGGTTCGGGGTAAGAGATTGGCTGATGGTGATTT
1 GGTAAAAGATCAGATGACTGCAATCTGCCCCAGGCTCAGAGTAAGAGATTGACTGATGGTGATTT
* *
134138 ACCCCAAGCTCGGGGTAAAAGATCGGATGGCTGTAATCTGCC
66 ACCCCAAGCTCGGGGTAAAAAATCGGATGACTGTAATCTGCC
134180 TCAAGCTTGG
Statistics
Matches: 91, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
117 29 0.32
118 62 0.68
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (117 bp):
GGTAAAAGATCAGATGACTGCAATCTGCCCCAGGCTCAGAGTAAGAGATTGACTGATGGTGATTT
ACCCCAAGCTCGGGGTAAAAAATCGGATGACTGTAATCTGCCCCATGATCGA
Found at i:134155 original size:78 final size:78
Alignment explanation
Indices: 134053--134519 Score: 443
Period size: 78 Copynumber: 6.0 Consensus size: 78
134043 TCGGATGACT
* * * * * * *
134053 GTGATCTGCCCCATGATCGAGGTAAGAGATCAGATGGTTGCAATCTGCCCCAGGTTCGGGGTAAG
1 GTGATCTGCCCCAAGCTCGGGGTAAAAGATCGGATGGCTGCAATCTGCCCCAGGCTCGGGGTAAG
134118 AGATTGGCTGATG
66 AGATTGGCTGATG
* * * * * *
134131 GTGATTTACCCCAAGCTCGGGGTAAAAGATCGGATGGCTGTAATCTGCCTCAAGCTTGGGGTAAG
1 GTGATCTGCCCCAAGCTCGGGGTAAAAGATCGGATGGCTGCAATCTGCCCCAGGCTCGGGGTAAG
134196 AGATTGGCTGATG
66 AGATTGGCTGATG
* ** * ** * * ** * *
134209 GTAATCTGCATCAGGCTCGGGGTAAAAGATCGGATGATTGTAATTTG-CGTAGGCACGAGGTAAG
1 GTGATCTGCCCCAAGCTCGGGGTAAAAGATCGGATGGCTGCAATCTGCCCCAGGCTCGGGGTAAG
* **
134273 AGATTGGCTAACA
66 AGATTGGCTGATG
* * * * **
134286 GTGATCTGCCTCAAGCTCGGGGTAAAAGATCGGATGGCTGTAATTTGCCCTAATCTCGGGGTAAG
1 GTGATCTGCCCCAAGCTCGGGGTAAAAGATCGGATGGCTGCAATCTGCCCCAGGCTCGGGGTAAG
* *
134351 AGATTGGTTGACG
66 AGATTGGCTGATG
* * * * * ** *
134364 GTGATTTGCCCCAGGCTCGAGATAAAAGATTGGATGGCTGCAATCTATCCCAGGCACGGGGTAAG
1 GTGATCTGCCCCAAGCTCGGGGTAAAAGATCGGATGGCTGCAATCTGCCCCAGGCTCGGGGTAAG
*
134429 AGATTAGCTGATG
66 AGATTGGCTGATG
* * * * * * *
134442 GTGATCTACCCTAAGCTCGGGGGAAAAGATCGGATGGTTGCAAT-TGGTCTCAAGCTCGGGGTAA
1 GTGATCTGCCCCAAGCTCGGGGTAAAAGATCGGATGGCTGCAATCT-GCCCCAGGCTCGGGGTAA
134506 GAGATTGGCTGATG
65 GAGATTGGCTGATG
134520 TAGTTTGAAT
Statistics
Matches: 312, Mismatches: 75, Indels: 4
0.80 0.19 0.01
Matches are distributed among these distances:
77 64 0.21
78 248 0.79
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (78 bp):
GTGATCTGCCCCAAGCTCGGGGTAAAAGATCGGATGGCTGCAATCTGCCCCAGGCTCGGGGTAAG
AGATTGGCTGATG
Found at i:134156 original size:196 final size:195
Alignment explanation
Indices: 133877--134245 Score: 461
Period size: 196 Copynumber: 1.9 Consensus size: 195
133867 CCTAGCTCGG
* * * *
133877 GGTAAAAGATCGGATGGTTGTAATCTGCCCCAAGCTCAGGATAAGAGATTTGTTGACGATGATCT
1 GGTAAAAGATCAGATGGTTGCAATCTGCCCCAAGCTCAGGATAAGAGATTGGCTGACGATGATCT
* * *
133942 ACCCTAGGCTCAGGGTAAAAGATCGGATGACTGCAATCTGCCCCTAGCTCAGAGTAAGAGATTGA
66 ACCCCAAGCTCAGGGTAAAAGATCGGATGACTGCAATCTGCCCCAAGCTCAGAGTAAGAGATTGA
* * * *
134007 TTGATGGTGATTTGC-CCTAGGCTCGGGGGTAAAAAATCGGATGACTGTGATCTGCCCCATGATC
131 CTGATGGTAATCTGCATC-AGGCTC-GGGGTAAAAAATCGGATGACTGTGATCTGCCCCATGATC
134071 GA
194 GA
* * * * * * * *
134073 GGTAAGAGATCAGATGGTTGCAATCTGCCCCAGGTTCGGGGTAAGAGATTGGCTGATGGTGATTT
1 GGTAAAAGATCAGATGGTTGCAATCTGCCCCAAGCTCAGGATAAGAGATTGGCTGACGATGATCT
* * * * ** * *
134138 ACCCCAAGCTCGGGGTAAAAGATCGGATGGCTGTAATCTGCCTCAAGCTTGGGGTAAGAGATTGG
66 ACCCCAAGCTCAGGGTAAAAGATCGGATGACTGCAATCTGCCCCAAGCTCAGAGTAAGAGATTGA
*
134203 CTGATGGTAATCTGCATCAGGCTCGGGGTAAAAGATCGGATGA
131 CTGATGGTAATCTGCATCAGGCTCGGGGTAAAAAATCGGATGA
134246 TTGTAATTTG
Statistics
Matches: 144, Mismatches: 28, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
195 18 0.12
196 125 0.87
197 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25
Consensus pattern (195 bp):
GGTAAAAGATCAGATGGTTGCAATCTGCCCCAAGCTCAGGATAAGAGATTGGCTGACGATGATCT
ACCCCAAGCTCAGGGTAAAAGATCGGATGACTGCAATCTGCCCCAAGCTCAGAGTAAGAGATTGA
CTGATGGTAATCTGCATCAGGCTCGGGGTAAAAAATCGGATGACTGTGATCTGCCCCATGATCGA
Found at i:134185 original size:39 final size:39
Alignment explanation
Indices: 133860--134510 Score: 258
Period size: 39 Copynumber: 16.7 Consensus size: 39
133850 GAGATTGGTG
* * * *
133860 ATCTGTCCCTAGCTCGGGGTAAAAGATCGGATGGTTGTA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTGTA
* * ** * * *
133899 ATCTGCCCCAAGCTCAGGATAAGAGATTTGTTGAC-GATG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTG-TA
* * * * * * *
133938 ATCTACCCTAGGCTCAGGGTAAAAGATCGGATGACTGCA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTGTA
* * * * * * *
133977 ATCTGCCCCTAGCTCAGAGTAAGAGAT-TGATTGATGGTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCT-GTA
* * * * * * *
134016 ATTTGCCCTAGGCTCGGGGGTAAAAAATCGGATGACTGTG
1 ATCTGCCCCAAGCTC-GGGGTAAGAGATCGGATGGCTGTA
* * * * * *
134056 ATCTGCCCCATGATCGAGGTAAGAGATCAGATGGTTGCA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTGTA
* * * * * *
134095 ATCTGCCCCAGGTTCGGGGTAAGAGATTGGCT-GATGGTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCT-GTA
* * *
134134 ATTTACCCCAAGCTCGGGGTAAAAGATCGGATGGCTGTA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTGTA
* * * * *
134173 ATCTGCCTCAAGCTTGGGGTAAGAGATTGGCT-GATGGTA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCT-GTA
** * * **
134212 ATCTGCATCAGGCTCGGGGTAAAAGATCGGATGATTGTA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTGTA
* ** * * * * * ** * *
134251 ATTTG-CGTAGGCACGAGGTAAGAGATTGGCTAACAGTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTGTA
* *
134289 ATCTGCCTCAAGCTCGGGGTAAAAGATCGGATGGCTGTA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTGTA
* * * * * * * *
134328 ATTTGCCCTAATCTCGGGGTAAGAGATTGGTTGACGGTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTGTA
* * * * * * *
134367 ATTTGCCCCAGGCTCGAGATAAAAGATTGGATGGCTGCA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTGTA
** * * *
134406 ATCTATCCCAGGCACGGGGTAAGAGATTAGCTGATGG-TG--
1 ATCTGCCCCAAGCTCGGGGTAAGAGA-T--CGGATGGCTGTA
* * * * * *
134445 ATCTACCCTAAGCTCGGGGGAAAAGATCGGATGGTTGCA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTGTA
* *
134484 AT-TGGTCTCAAGCTCGGGGTAAGAGAT
1 ATCT-GCCCCAAGCTCGGGGTAAGAGAT
134511 TGGCTGATGT
Statistics
Matches: 435, Mismatches: 160, Indels: 34
0.69 0.25 0.05
Matches are distributed among these distances:
36 6 0.01
37 2 0.00
38 36 0.08
39 353 0.81
40 27 0.06
41 6 0.01
42 5 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (39 bp):
ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTGTA
Found at i:134315 original size:155 final size:154
Alignment explanation
Indices: 134112--134519 Score: 480
Period size: 155 Copynumber: 2.6 Consensus size: 154
134102 CCAGGTTCGG
*
134112 GGTAAGAGATTGGCTGATGGTGATTTACCCCAAGCTCGGGGTAAAAGATCGGATGGCTGTAATCT
1 GGTAAGAGATTGGCTGATGGTGATCTA-CCCAAGCTCGGGGTAAAAGATCGGATGGCTGTAAT-T
* * * *
134177 GCCTCAAGCTTGGGGTAAGAGATTGGCTGATGGTAATCTGCATCAGGCTCGGGGTAAAAGATCGG
64 GCCTCAAGCTCGGGGTAAGAGATTGGCTGATGGTAATCTGCACCAGGCTCGAGATAAAAGATCGG
* * **
134242 ATGATTGTAAT-T-TGCGTAGGCACGA
129 ATGACTGCAATCTAT-CCCAGGCACGA
* ** *
134267 GGTAAGAGATTGGCTAACAGTGATCTGCCTCAAGCTCGGGGTAAAAGATCGGATGGCTGTAATTT
1 GGTAAGAGATTGGCTGATGGTGATCTACC-CAAGCTCGGGGTAAAAGATCGGATGGCTGTAA-TT
* * * * * * *
134332 GCC-CTAATCTCGGGGTAAGAGATTGGTTGACGGTGATTTGCCCCAGGCTCGAGATAAAAGATTG
64 GCCTC-AAGCTCGGGGTAAGAGATTGGCTGATGGTAATCTGCACCAGGCTCGAGATAAAAGATCG
* *
134396 GATGGCTGCAATCTATCCCAGGCACGG
128 GATGACTGCAATCTATCCCAGGCACGA
* * * *
134423 GGTAAGAGATTAGCTGATGGTGATCTACCCTAAGCTCGGGGGAAAAGATCGGATGGTTGCAATTG
1 GGTAAGAGATTGGCTGATGGTGATCTACCC-AAGCTCGGGGTAAAAGATCGGATGGCTGTAATT-
*
134488 GTCTCAAGCTCGGGGTAAGAGATTGGCTGATG
64 GCCTCAAGCTCGGGGTAAGAGATTGGCTGATG
134520 TAGTTTGAAT
Statistics
Matches: 211, Mismatches: 34, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
154 3 0.01
155 118 0.56
156 88 0.42
157 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.33, T:0.25
Consensus pattern (154 bp):
GGTAAGAGATTGGCTGATGGTGATCTACCCAAGCTCGGGGTAAAAGATCGGATGGCTGTAATTGC
CTCAAGCTCGGGGTAAGAGATTGGCTGATGGTAATCTGCACCAGGCTCGAGATAAAAGATCGGAT
GACTGCAATCTATCCCAGGCACGA
Found at i:135112 original size:50 final size:48
Alignment explanation
Indices: 135053--135174 Score: 138
Period size: 48 Copynumber: 2.5 Consensus size: 48
135043 GAATTTGTCA
* *
135053 TTGCGGCCTCAATCC-TTCCCATCACATCTTCTAAGGTACCGGGTTTACCG
1 TTGCGGCCTCAA-CCTTTCCCATCA-ATCTTC-AAGGTACCGGATTCACCG
* * * *
135103 TTGCGGCCTCAACCTTTCCCTTTAATCTTCATGGTATCGGATTCACCG
1 TTGCGGCCTCAACCTTTCCCATCAATCTTCAAGGTACCGGATTCACCG
* *
135151 TTGCAGCCTTAACCTTTCCCATCA
1 TTGCGGCCTCAACCTTTCCCATCA
135175 TATTTCATTA
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
48 34 0.56
49 8 0.13
50 19 0.31
ACGTcount: A:0.18, C:0.34, G:0.16, T:0.33
Consensus pattern (48 bp):
TTGCGGCCTCAACCTTTCCCATCAATCTTCAAGGTACCGGATTCACCG
Found at i:136170 original size:17 final size:17
Alignment explanation
Indices: 136150--136187 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
136140 TTCATTTTGA
136150 TTTTCTTTT-TTCTTCCT
1 TTTTCTTTTCTT-TTCCT
136167 TTTTCTTTTCTTTTCCT
1 TTTTCTTTTCTTTTCCT
136184 TTTT
1 TTTT
136188 TTTAAAGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 18 0.90
18 2 0.10
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTCTTTTCTTTTCCT
Found at i:142222 original size:23 final size:22
Alignment explanation
Indices: 142182--142228 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
142172 CAGCAAGTTG
* *
142182 AATTTAAATGAATTTAAACTTC
1 AATTTAAATAAATCTAAACTTC
*
142204 AATTTAAAATAAATCTAAATTTC
1 AATTT-AAATAAATCTAAACTTC
142227 AA
1 AA
142229 ATAAATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.38
Consensus pattern (22 bp):
AATTTAAATAAATCTAAACTTC
Found at i:142224 original size:17 final size:17
Alignment explanation
Indices: 142204--142258 Score: 74
Period size: 17 Copynumber: 3.2 Consensus size: 17
142194 TTTAAACTTC
*
142204 AATTTAAAATAAATCTA
1 AATTTAAAATAAATTTA
*
142221 AATTTCAAATAAATTTA
1 AATTTAAAATAAATTTA
* *
142238 AACTTAAAAAAAATTTA
1 AATTTAAAATAAATTTA
142255 AATT
1 AATT
142259 CTGTTTGGGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.36
Consensus pattern (17 bp):
AATTTAAAATAAATTTA
Found at i:147236 original size:50 final size:50
Alignment explanation
Indices: 147161--147267 Score: 144
Period size: 50 Copynumber: 2.1 Consensus size: 50
147151 CCTATACCCT
*
147161 TAAAGCTGTAGAGGGGAAGATTGAAGCCGCAATGG-TGAATCTCATTCACC
1 TAAAGCTGTAGAGGGGAAGATTGAAGCCGCAA-GGATGAATCTCATACACC
* * * * *
147211 TAAAGCTGTAGAGGGGCAGATTGAAGTCGTAAGGATGAATCTTATACTCC
1 TAAAGCTGTAGAGGGGAAGATTGAAGCCGCAAGGATGAATCTCATACACC
147261 TAAAGCT
1 TAAAGCT
147268 AAAATGAAGT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
49 2 0.04
50 48 0.96
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (50 bp):
TAAAGCTGTAGAGGGGAAGATTGAAGCCGCAAGGATGAATCTCATACACC
Found at i:148646 original size:30 final size:30
Alignment explanation
Indices: 148607--148815 Score: 181
Period size: 30 Copynumber: 7.0 Consensus size: 30
148597 TTTTGAGCTT
* *
148607 TAAATTTTCTAAAAATTCAAATTTGACCCC
1 TAAACTTTCTAAAAATTTAAATTTGACCCC
* * **
148637 TAAAATTTCTAAAAATTTAAATTTAACCTT
1 TAAACTTTCTAAAAATTTAAATTTGACCCC
* *
148667 TAAACTTT-TCAAAAATTTGAATTTGACCCT
1 TAAACTTTCT-AAAAATTTAAATTTGACCCC
* *
148697 TAAACTTTCTAAAAATTTGAATTTAACCCC
1 TAAACTTTCTAAAAATTTAAATTTGACCCC
* * **
148727 TAAATTTTCCAAAAATTCCAATTTGAACCCC
1 TAAACTTTCTAAAAATTTAAATTTG-ACCCC
* * **
148758 -AAACTTTCCAAATATTTTGATTTGACCCC
1 TAAACTTTCTAAAAATTTAAATTTGACCCC
* * *
148787 TAAA-TTTCCCAAAAATTCAAATTTAACCC
1 TAAACTTT-CTAAAAATTTAAATTTGACCC
148816 AATTTTAATG
Statistics
Matches: 148, Mismatches: 26, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
29 9 0.06
30 133 0.90
31 6 0.04
ACGTcount: A:0.40, C:0.20, G:0.03, T:0.37
Consensus pattern (30 bp):
TAAACTTTCTAAAAATTTAAATTTGACCCC
Found at i:148668 original size:60 final size:60
Alignment explanation
Indices: 148607--148815 Score: 242
Period size: 60 Copynumber: 3.5 Consensus size: 60
148597 TTTTGAGCTT
* * **
148607 TAAATTTTCTAAAAATTCAAATTTGACCCCTAAAATTTCTAAAAATTTAAATTTAACCTT
1 TAAATTTTCCAAAAATTCAAATTTGACCCCTAAACTTTCTAAAAATTTAAATTTAACCCC
** * *
148667 TAAACTTTT-CAAAAATTTGAATTTGACCCTTAAACTTTCTAAAAATTTGAATTTAACCCC
1 TAAA-TTTTCCAAAAATTCAAATTTGACCCCTAAACTTTCTAAAAATTTAAATTTAACCCC
* * * ** *
148727 TAAATTTTCCAAAAATTCCAATTTGAACCCC-AAACTTTCCAAATATTTTGATTTGACCCC
1 TAAATTTTCCAAAAATTCAAATTTG-ACCCCTAAACTTTCTAAAAATTTAAATTTAACCCC
* *
148787 TAAATTTCCCAAAAATTCAAATTTAACCC
1 TAAATTTTCCAAAAATTCAAATTTGACCC
148816 AATTTTAATG
Statistics
Matches: 127, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
59 8 0.06
60 111 0.87
61 8 0.06
ACGTcount: A:0.40, C:0.20, G:0.03, T:0.37
Consensus pattern (60 bp):
TAAATTTTCCAAAAATTCAAATTTGACCCCTAAACTTTCTAAAAATTTAAATTTAACCCC
Found at i:148711 original size:90 final size:89
Alignment explanation
Indices: 148606--148815 Score: 244
Period size: 90 Copynumber: 2.3 Consensus size: 89
148596 GTTTTGAGCT
* * * **
148606 TTAAATTTTCTAAAAATTCAAATTTGACCCCTAAAATTTCTAAAAATTTAAATTT-AACCTTTAA
1 TTAAA-TTTCTAAAAATTCAAATTTAACCCCTAAAATTTCCAAAAATTCAAATTTGAACC-CCAA
*
148670 ACTTTTCAAA-AATTTGAATTTGACCC
64 ACTTTCCAAATAATTTG-ATTTGACCC
** * *
148696 TTAAACTTTCTAAAAATTTGAATTTAACCCCTAAATTTTCCAAAAATTCCAATTTGAACCCCAAA
1 TTAAA-TTTCTAAAAATTCAAATTTAACCCCTAAAATTTCCAAAAATTCAAATTTGAACCCCAAA
*
148761 CTTTCCAAATATTTTGATTTGACCC
65 CTTTCCAAATAATTTGATTTGACCC
* *
148786 CTAAATTTCCCAAAAATTCAAATTTAACCC
1 TTAAATTT-CTAAAAATTCAAATTTAACCC
148816 AATTTTAATG
Statistics
Matches: 101, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
89 3 0.03
90 89 0.88
91 9 0.09
ACGTcount: A:0.40, C:0.20, G:0.03, T:0.37
Consensus pattern (89 bp):
TTAAATTTCTAAAAATTCAAATTTAACCCCTAAAATTTCCAAAAATTCAAATTTGAACCCCAAAC
TTTCCAAATAATTTGATTTGACCC
Found at i:149488 original size:21 final size:21
Alignment explanation
Indices: 149464--149505 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
149454 AAATTATTGG
149464 TGGTGACTCCATTTTTATTTT
1 TGGTGACTCCATTTTTATTTT
149485 TGGTGACTCCATTTTTATTTT
1 TGGTGACTCCATTTTTATTTT
149506 CCAAAATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57
Consensus pattern (21 bp):
TGGTGACTCCATTTTTATTTT
Found at i:152544 original size:16 final size:16
Alignment explanation
Indices: 152498--152545 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
152488 ACTTTTGATA
*
152498 AAAAAAATTTAAA-TT
1 AAAAAATTTTAAATTT
*
152513 AATAATAATATTAAATTT
1 AA-AA-AATTTTAAATTT
152531 AAAAAATTTTAAATT
1 AAAAAATTTTAAATT
152546 ATCTAAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
15 2 0.07
16 12 0.44
17 9 0.33
18 4 0.15
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AAAAAATTTTAAATTT
Found at i:152723 original size:27 final size:29
Alignment explanation
Indices: 152676--152731 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 29
152666 AAAAATAATT
152676 TTTAATATTTTAATAAATTA-TAAAAAAA
1 TTTAATATTTTAATAAATTATTAAAAAAA
* *
152704 TTTAAT-TTTTTATAATTTATTAAAAAAA
1 TTTAATATTTTAATAAATTATTAAAAAAA
152732 ATACATTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 11 0.44
28 14 0.56
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
TTTAATATTTTAATAAATTATTAAAAAAA
Found at i:152806 original size:16 final size:17
Alignment explanation
Indices: 152787--152824 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
152777 CAATTATCAT
* *
152787 TTTTTTGTA-ATTTCTA
1 TTTTTTATATATTTATA
152803 TTTTTTATATATTTATA
1 TTTTTTATATATTTATA
152820 TTTTT
1 TTTTT
152825 AATGTGTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (17 bp):
TTTTTTATATATTTATA
Found at i:158524 original size:16 final size:16
Alignment explanation
Indices: 158503--158556 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
158493 TGAAATACTG
158503 ATTACAATTCTATTCC
1 ATTACAATTCTATTCC
** **
158519 ATTACAGCTCTATTAT
1 ATTACAATTCTATTCC
* *
158535 ATTATAATTGTATTCC
1 ATTACAATTCTATTCC
158551 ATTACA
1 ATTACA
158557 GCGAACTAAA
Statistics
Matches: 27, Mismatches: 11, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.33, C:0.19, G:0.04, T:0.44
Consensus pattern (16 bp):
ATTACAATTCTATTCC
Found at i:166317 original size:12 final size:12
Alignment explanation
Indices: 166302--166355 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
166292 TTTAAATTTT
166302 TTAAAAAATTAA
1 TTAAAAAATTAA
*
166314 TTAAAAAA-TGA
1 TTAAAAAATTAA
166325 -T-AAAAATGTAA
1 TTAAAAAAT-TAA
*
166336 -CAAAAAATTAA
1 TTAAAAAATTAA
166347 TTAAAAAAT
1 TTAAAAAAT
166356 GATAAAAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
9 5 0.15
10 1 0.03
11 7 0.21
12 21 0.62
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.28
Consensus pattern (12 bp):
TTAAAAAATTAA
Found at i:166346 original size:33 final size:33
Alignment explanation
Indices: 166304--166370 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
166294 TAAATTTTTT
166304 AAAAAATTAATTAAAAAATGATAAAAATGTAAC
1 AAAAAATTAATTAAAAAATGATAAAAATGTAAC
166337 AAAAAATTAATTAAAAAATGATAAAAATGTAAC
1 AAAAAATTAATTAAAAAATGATAAAAATGTAAC
166370 A
1 A
166371 CCCTATACTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.67, C:0.03, G:0.06, T:0.24
Consensus pattern (33 bp):
AAAAAATTAATTAAAAAATGATAAAAATGTAAC
Found at i:181084 original size:29 final size:29
Alignment explanation
Indices: 180980--181167 Score: 177
Period size: 30 Copynumber: 6.3 Consensus size: 29
180970 GCTCTCGAAC
* *
180980 TTTCAAAAATCACATTTTAA-CCCTCAAGCT
1 TTTC-AAAATTACATTTTAACCCCT-AAACT
* * * *
181010 TCTCCAAAATTGCATTTTGACCACTAAA-T
1 T-TTCAAAATTACATTTTAACCCCTAAACT
* *
181039 TCTTCAAAAATTACATTATGACCCCTAAACT
1 T-TTC-AAAATTACATTTTAACCCCTAAACT
181070 CTTTC-AAATTACATTTTAACCCCTAAACT
1 -TTTCAAAATTACATTTTAACCCCTAAACT
*
181099 TTTCTAAAATTATATTTTAA-CCCTAAACT
1 TTTC-AAAATTACATTTTAACCCCTAAACT
*
181128 TTTCCAAAATTACATTTTAACCCTTAAACT
1 TTT-CAAAATTACATTTTAACCCCTAAACT
181158 TTTCTAAAAT
1 TTTC-AAAAT
181168 GACCCTTTTG
Statistics
Matches: 133, Mismatches: 15, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
28 4 0.03
29 54 0.41
30 65 0.49
31 9 0.07
32 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.02, T:0.38
Consensus pattern (29 bp):
TTTCAAAATTACATTTTAACCCCTAAACT
Found at i:181096 original size:59 final size:59
Alignment explanation
Indices: 180980--181167 Score: 202
Period size: 59 Copynumber: 3.2 Consensus size: 59
180970 GCTCTCGAAC
* * * * * * *
180980 TTTCAAAAATCACATTTTAACCCTCAAGCTTCTCCAAAATTGCATTTTGACCACTAAA-T
1 TTTCAAAAATTACATTTGAACCCT-AAACTTTTCCAAAATTACATTTTAACCCCTAAACT
*
181039 TCTTCAAAAATTACATTATGACCCCTAAACTCTTT-C-AAATTACATTTTAACCCCTAAACT
1 T-TTCAAAAATTACATT-TGAACCCTAAACT-TTTCCAAAATTACATTTTAACCCCTAAACT
* * * *
181099 TTTCTAAAATTATATTTTAACCCTAAACTTTTCCAAAATTACATTTTAACCCTTAAACT
1 TTTCAAAAATTACATTTGAACCCTAAACTTTTCCAAAATTACATTTTAACCCCTAAACT
*
181158 TTTCTAAAAT
1 TTTCAAAAAT
181168 GACCCTTTTG
Statistics
Matches: 110, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
57 3 0.03
58 12 0.11
59 66 0.60
60 21 0.19
61 8 0.07
ACGTcount: A:0.37, C:0.23, G:0.02, T:0.38
Consensus pattern (59 bp):
TTTCAAAAATTACATTTGAACCCTAAACTTTTCCAAAATTACATTTTAACCCCTAAACT
Found at i:181202 original size:59 final size:58
Alignment explanation
Indices: 180980--181214 Score: 165
Period size: 59 Copynumber: 4.0 Consensus size: 58
180970 GCTCTCGAAC
* * * ** *
180980 TTTCAAAAATCACATTTTAACCCTCAAGCTTCTCCAAAATTGCATTTTGACCAC-TAAA-T
1 TTTCTAAAATGACATTTTAACCC-CAAACTT-TCCAAAATCACATTTTAACC-CTTAAACT
* * * * * * *
181039 TCTTCAAAAATTACATTATGACCCCTAAACTCTTTC-AAATTACATTTTAACCCCTAAACT
1 T-TTCTAAAATGACATTTTAACCCC-AAACT-TTCCAAAATCACATTTTAACCCTTAAACT
* * * *
181099 TTTCTAAAATTATATTTTAACCCTAAACTTTTCCAAAATTACATTTTAACCCTTAAACT
1 TTTCTAAAATGACATTTTAACCCCAAAC-TTTCCAAAATCACATTTTAACCCTTAAACT
* **
181158 TTTCTAAAATGACCCTTTTGCCCCCAAA-TTTCCAAAAGTCACATTTTCAA-CCTTAAA
1 TTTCTAAAATGA-CATTTTAACCCCAAACTTTCCAAAA-TCACATTTT-AACCCTTAAA
181215 TTATCCAAAA
Statistics
Matches: 145, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
58 17 0.12
59 88 0.61
60 39 0.27
61 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.36
Consensus pattern (58 bp):
TTTCTAAAATGACATTTTAACCCCAAACTTTCCAAAATCACATTTTAACCCTTAAACT
Found at i:192498 original size:26 final size:26
Alignment explanation
Indices: 192400--192483 Score: 78
Period size: 26 Copynumber: 3.2 Consensus size: 26
192390 ACTGAACTGG
* * *
192400 GAGCGATATACTATACTGGCTCGTAT
1 GAGCGACATACTGTACTGGCTCGTAA
* * ** *
192426 GAGCAATATACTACATTGGCTCGTAA
1 GAGCGACATACTGTACTGGCTCGTAA
* *
192452 GAGCGACATATTGTACTGGCTTGTAA
1 GAGCGACATACTGTACTGGCTCGTAA
192478 GAGCGA
1 GAGCGA
192484 TTTACTGACT
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
GAGCGACATACTGTACTGGCTCGTAA
Found at i:195948 original size:6 final size:6
Alignment explanation
Indices: 195934--195967 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
195924 TCTTTCTCTT
* *
195934 TCTCTC TCTCCC TCTCTC TCTCCC TCTCCC TCTC
1 TCTCCC TCTCCC TCTCCC TCTCCC TCTCCC TCTC
195968 TCATTTTTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (6 bp):
TCTCCC
Found at i:195949 original size:18 final size:18
Alignment explanation
Indices: 195928--195969 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
195918 AAATTCTCTT
* *
195928 TCTCTTTCTCTCTCTCCC
1 TCTCTCTCTCCCTCTCCC
195946 TCTCTCTCTCCCTCTCCC
1 TCTCTCTCTCCCTCTCCC
195964 TCTCTC
1 TCTCTC
195970 ATTTTTCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (18 bp):
TCTCTCTCTCCCTCTCCC
Found at i:195956 original size:12 final size:12
Alignment explanation
Indices: 195934--195967 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
195924 TCTTTCTCTT
195934 TCTCTCTCTCCC
1 TCTCTCTCTCCC
195946 TCTCTCTCTCCC
1 TCTCTCTCTCCC
*
195958 TCTCCCTCTC
1 TCTCTCTCTC
195968 TCATTTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (12 bp):
TCTCTCTCTCCC
Found at i:199271 original size:24 final size:24
Alignment explanation
Indices: 199259--199305 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
199249 GTAATGTCTG
*
199259 CAGGAACCTCATCAGCAACATTTA
1 CAGGAACCTCATCAGCAACATCTA
*
199283 CAGGAACCTCATCAACAACATCT
1 CAGGAACCTCATCAGCAACATCT
199306 GTGGTCAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.38, C:0.32, G:0.11, T:0.19
Consensus pattern (24 bp):
CAGGAACCTCATCAGCAACATCTA
Found at i:205813 original size:46 final size:45
Alignment explanation
Indices: 205734--205825 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 45
205724 CCAATATGGG
* *
205734 TATTTAATCATGGATATATTTTTTGTTTGTAAAATATTATTATGT
1 TATTTAATCATGGAAATATTTTTTGTTTGTAAAATACTATTATGT
205779 TATTTAATCATGGACAATATTTTTTGTTTGTAAAATACTATTATGT
1 TATTTAATCATGGA-AATATTTTTTGTTTGTAAAATACTATTATGT
205825 T
1 T
205826 TTGAATATCT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
45 14 0.32
46 30 0.68
ACGTcount: A:0.32, C:0.04, G:0.11, T:0.53
Consensus pattern (45 bp):
TATTTAATCATGGAAATATTTTTTGTTTGTAAAATACTATTATGT
Found at i:207973 original size:18 final size:18
Alignment explanation
Indices: 207935--207970 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
207925 AATGTACGAG
207935 TTAAATATGTTTATTAAT
1 TTAAATATGTTTATTAAT
207953 TTAAATAT-TTTA-TAAT
1 TTAAATATGTTTATTAAT
207969 TT
1 TT
207971 TTAGTTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 4 0.22
18 8 0.44
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (18 bp):
TTAAATATGTTTATTAAT
Found at i:209894 original size:9 final size:9
Alignment explanation
Indices: 209880--209906 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
209870 TCCCTATCCC
209880 CTTTCATTT
1 CTTTCATTT
209889 CTTTCATTT
1 CTTTCATTT
209898 CTTTCATTT
1 CTTTCATTT
209907 TTGCCATAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.22, G:0.00, T:0.67
Consensus pattern (9 bp):
CTTTCATTT
Found at i:213401 original size:53 final size:52
Alignment explanation
Indices: 213306--213596 Score: 345
Period size: 53 Copynumber: 5.5 Consensus size: 52
213296 TTTACATTTG
* * * *
213306 ATAACTCACGATGACACAGAGTAATCAAACCTCTAATCCGTAATAGGATTCAT
1 ATAACTCACGATGACACAGAGTCATCGAACTTGTAAT-CGTAATAGGATTCAT
*
213359 ATAACTCACGATGACACA-ATGTTATCGAACTTGTAATACGTAATAGGATTCAT
1 ATAACTCACGATGACACAGA-GTCATCGAACTTGTAAT-CGTAATAGGATTCAT
*
213412 ATAACTCACGATGACACAGAGTCATCGGACCTT-TAATCTGTAATAGGATTCAT
1 ATAACTCACGATGACACAGAGTCATC-GAACTTGTAATC-GTAATAGGATTCAT
* * * *
213465 ATAACTCACGATGACACAGAGACATCGGAC-CGTTAATCTATAATAGGATTCAT
1 ATAACTCACGATGACACAGAGTCATCGAACTTG-TAATC-GTAATAGGATTCAT
* * * *
213518 ATAACTCACGATAACACAAATTCATCGAACTTGTAATCCGTAATAGAATTCAT
1 ATAACTCACGATGACACAGAGTCATCGAACTTGTAAT-CGTAATAGGATTCAT
* *
213571 ATACCTCACGATGACACAAAGTCATC
1 ATAACTCACGATGACACAGAGTCATC
213597 AAACCTTTTT
Statistics
Matches: 207, Mismatches: 23, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
52 4 0.02
53 195 0.94
54 8 0.04
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.26
Consensus pattern (52 bp):
ATAACTCACGATGACACAGAGTCATCGAACTTGTAATCGTAATAGGATTCAT
Found at i:213595 original size:159 final size:159
Alignment explanation
Indices: 213306--213596 Score: 444
Period size: 159 Copynumber: 1.8 Consensus size: 159
213296 TTTACATTTG
*
213306 ATAACTCACGATGACACAGAGTAATCAAACCTCTAATCCGTAATAGGATTCATATAACTCACGAT
1 ATAACTCACGATGACACAGAGTAATCAAACCTCTAATCCATAATAGGATTCATATAACTCACGAT
* * * *
213371 GACACAATGTTATCGAACTTGTAATACGTAATAGGATTCATATAACTCACGATGACACAGAGTCA
66 AACACAATGTCATCGAACTTGTAATACGTAATAGAATTCATATAACTCACGATGACACAAAGTCA
213436 TCGGACCTTTAATCTGTAATAGGATTCAT
131 TCGGACCTTTAATCTGTAATAGGATTCAT
** *
213465 ATAACTCACGATGACACAGAG-ACATCGGACCGT-TAATCTATAATAGGATTCATATAACTCACG
1 ATAACTCACGATGACACAGAGTA-ATCAAACC-TCTAATCCATAATAGGATTCATATAACTCACG
* *
213528 ATAACACAAAT-TCATCGAACTTGTAATCCGTAATAGAATTCATATACCTCACGATGACACAAAG
64 ATAACAC-AATGTCATCGAACTTGTAATACGTAATAGAATTCATATAACTCACGATGACACAAAG
213592 TCATC
128 TCATC
213597 AAACCTTTTT
Statistics
Matches: 119, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
158 1 0.01
159 114 0.96
160 4 0.03
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.26
Consensus pattern (159 bp):
ATAACTCACGATGACACAGAGTAATCAAACCTCTAATCCATAATAGGATTCATATAACTCACGAT
AACACAATGTCATCGAACTTGTAATACGTAATAGAATTCATATAACTCACGATGACACAAAGTCA
TCGGACCTTTAATCTGTAATAGGATTCAT
Found at i:218134 original size:53 final size:53
Alignment explanation
Indices: 218057--218355 Score: 384
Period size: 53 Copynumber: 5.6 Consensus size: 53
218047 TTCACATTTG
* * *
218057 ATAACTCACGATGACACAGAGTCATCGGACCTCTAGTCTGTAATAGGATTCAT
1 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCGTAATAGGATTCAT
** * * *
218110 ATAACTCACGATGATGCA-ATGTCATTGGACCTGTAATACGTAATAGGATTCAT
1 ATAACTCACGATGACACAGA-GTCATCGGACCTTTAATCCGTAATAGGATTCAT
* *
218163 ATAACTCACGATGACACAGAGTCATCAGACCTTTAATCCGTAATAGGATTCGT
1 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCGTAATAGGATTCAT
* * * *
218216 ATAATTCACGATGACACAGAGTCATCAGACCTTTAATCCATAATAGGGTTCAT
1 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCGTAATAGGATTCAT
** * * *
218269 ATAACTCATAATGACACAAATTCATCGGACCTATAATCCGTAATAGGATTCAT
1 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCGTAATAGGATTCAT
* * *
218322 ATACCTCACGATGACAAAGAGTCATCTGACCTTT
1 ATAACTCACGATGACACAGAGTCATCGGACCTTT
218356 TTCATTCACG
Statistics
Matches: 209, Mismatches: 35, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
52 1 0.00
53 207 0.99
54 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (53 bp):
ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCGTAATAGGATTCAT
Found at i:218353 original size:159 final size:159
Alignment explanation
Indices: 218057--218355 Score: 429
Period size: 159 Copynumber: 1.9 Consensus size: 159
218047 TTCACATTTG
* * ** *
218057 ATAACTCACGATGACACAGAGTCATCGGACCTCTAGTCTGTAATAGGATTCATATAACTCACGAT
1 ATAACTCACGATGACACAGAGTCATCAGACCTCTAATCCATAATAGGATTCATATAACTCACAAT
** * * *
218122 GATGCAATGTCATTGGACCTGTAATACGTAATAGGATTCATATAACTCACGATGACACAGAGTCA
66 GACACAATGTCATCGGACCTATAATACGTAATAGGATTCATATAACTCACGATGACAAAGAGTCA
218187 TCAGACCTTTAATCCGTAATAGGATTCGT
131 TCAGACCTTTAATCCGTAATAGGATTCGT
* * * *
218216 ATAATTCACGATGACACAGAGTCATCAGACCTTTAATCCATAATAGGGTTCATATAACTCATAAT
1 ATAACTCACGATGACACAGAGTCATCAGACCTCTAATCCATAATAGGATTCATATAACTCACAAT
* *
218281 GACACAAAT-TCATCGGACCTATAATCCGTAATAGGATTCATATACCTCACGATGACAAAGAGTC
66 GACAC-AATGTCATCGGACCTATAATACGTAATAGGATTCATATAACTCACGATGACAAAGAGTC
*
218345 ATCTGACCTTT
130 ATCAGACCTTT
218356 TTCATTCACG
Statistics
Matches: 122, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
159 119 0.98
160 3 0.02
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (159 bp):
ATAACTCACGATGACACAGAGTCATCAGACCTCTAATCCATAATAGGATTCATATAACTCACAAT
GACACAATGTCATCGGACCTATAATACGTAATAGGATTCATATAACTCACGATGACAAAGAGTCA
TCAGACCTTTAATCCGTAATAGGATTCGT
Found at i:222060 original size:36 final size:36
Alignment explanation
Indices: 222020--222095 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 36
222010 TGATGATTGT
** **
222020 TGTGAAAGTGAATATGTGGGTATGATCTTCATGCCA
1 TGTGAAAGAAAATATGTCAGTATGATCTTCATGCCA
* *
222056 TGTGACAGAAAATATGTCAGTATGTTCTTCATGCCA
1 TGTGAAAGAAAATATGTCAGTATGATCTTCATGCCA
222092 TGTG
1 TGTG
222096 TCTGATTATA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (36 bp):
TGTGAAAGAAAATATGTCAGTATGATCTTCATGCCA
Found at i:225038 original size:10 final size:9
Alignment explanation
Indices: 225019--225063 Score: 58
Period size: 10 Copynumber: 5.0 Consensus size: 9
225009 CTTTGGTGAA
225019 ATATATGTG
1 ATATATGTG
225028 ATATGATGTG
1 ATAT-ATGTG
225038 AT-TAT-TG
1 ATATATGTG
225045 ATATACTGTG
1 ATATA-TGTG
225055 ATATATGTG
1 ATATATGTG
225064 TAAATCTTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
7 4 0.12
8 4 0.12
9 10 0.31
10 14 0.44
ACGTcount: A:0.31, C:0.02, G:0.22, T:0.44
Consensus pattern (9 bp):
ATATATGTG
Found at i:225260 original size:29 final size:29
Alignment explanation
Indices: 225223--225281 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
225213 TCAGTATCTA
225223 TGTGTTGGCTTTACCACAAACTGGCTATG
1 TGTGTTGGCTTTACCACAAACTGGCTATG
225252 TGTGTTGGCTTTACCACAAACTGGCTATG
1 TGTGTTGGCTTTACCACAAACTGGCTATG
225281 T
1 T
225282 TAGATGGATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.36
Consensus pattern (29 bp):
TGTGTTGGCTTTACCACAAACTGGCTATG
Found at i:238523 original size:7 final size:7
Alignment explanation
Indices: 238511--238535 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
238501 ATGAAAAGAA
238511 TAATATT
1 TAATATT
238518 TAATATT
1 TAATATT
238525 TAATATT
1 TAATATT
238532 TAAT
1 TAAT
238536 TGTATTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TAATATT
Found at i:238630 original size:15 final size:15
Alignment explanation
Indices: 238569--238634 Score: 69
Period size: 15 Copynumber: 4.2 Consensus size: 15
238559 CATATTAAAC
238569 TATATTAAAATATTT
1 TATATTAAAATATTT
* * * *
238584 TGTTTTAAATTATAT
1 TATATTAAAATATTT
238599 TATATTAATTTAATATTT
1 TATATTAA---AATATTT
238617 TATATTAAAATATTT
1 TATATTAAAATATTT
238632 TAT
1 TAT
238635 TTTTACATTT
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
15 27 0.68
18 13 0.32
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (15 bp):
TATATTAAAATATTT
Found at i:238681 original size:15 final size:15
Alignment explanation
Indices: 238569--238681 Score: 57
Period size: 15 Copynumber: 7.1 Consensus size: 15
238559 CATATTAAAC
*
238569 TATATTAAAATATTT
1 TATATTAAATTATTT
* * *
238584 TGTTTTAAATTATAT
1 TATATTAAATTATTT
*
238599 TATATTAATTTAATATTT
1 TATATTAA---ATTATTT
*
238617 TATATTAAAATATTT
1 TATATTAAATTATTT
* *
238632 TATTTTTACATT-TTT
1 TA-TATTAAATTATTT
* *
238647 GAAATTTAAAATAATATTT
1 TATA-TT-AAAT--TATTT
238666 TATATTAAATTATTT
1 TATATTAAATTATTT
238681 T
1 T
238682 TTAATTTTTA
Statistics
Matches: 72, Mismatches: 17, Indels: 18
0.67 0.16 0.17
Matches are distributed among these distances:
15 38 0.53
16 9 0.12
17 4 0.06
18 16 0.22
19 5 0.07
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.58
Consensus pattern (15 bp):
TATATTAAATTATTT
Found at i:245295 original size:27 final size:27
Alignment explanation
Indices: 245251--245302 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
245241 GGTTTGGTTT
245251 TTTTATTTAGGTTAGTTTTGGGTTTCA
1 TTTTATTTAGGTTAGTTTTGGGTTTCA
*
245278 TTTTATTT-GAGTTGGTTTTGGGTTT
1 TTTTATTTAG-GTTAGTTTTGGGTTT
245303 GTTTATGTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.12, C:0.02, G:0.25, T:0.62
Consensus pattern (27 bp):
TTTTATTTAGGTTAGTTTTGGGTTTCA
Found at i:248482 original size:17 final size:17
Alignment explanation
Indices: 248460--248493 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
248450 ATGAAATAAA
*
248460 ATATTATCATAAAAAAT
1 ATATTATAATAAAAAAT
*
248477 ATATTATAATAAGAAAT
1 ATATTATAATAAAAAAT
248494 TATAAATATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (17 bp):
ATATTATAATAAAAAAT
Found at i:248521 original size:24 final size:24
Alignment explanation
Indices: 248473--248522 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
248463 TTATCATAAA
*
248473 AAATATATTATAATAAGAAATTAT
1 AAATATATTATAATAAGAAAATAT
248497 AAATATATTA-AATCATA-AAAATAT
1 AAATATATTATAAT-A-AGAAAATAT
248521 AA
1 AA
248523 TAATCTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 3 0.13
24 19 0.83
25 1 0.04
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (24 bp):
AAATATATTATAATAAGAAAATAT
Done.