Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004569.1 Kokia drynarioides strain JFW-HI SEQ_118052, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5785
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.36


Found at i:459 original size:52 final size:52

Alignment explanation


    Indices: 376--728  Score: 546
    Period size: 52  Copynumber: 6.8  Consensus size: 52

        366 ATTTCACTTC

                     *            *   *                   **  *  
        376 ATTCATATAATCACGATGACACATAGCCATCGGACCT-TATAATCCACAAGGG
          1 ATTCATATACTCACGATGACACTTAGTCATCGGACCTCT-TAATCCGTAAAGG

                                  *                      *      
        428 ATTCATATACTCACGATGACACATAGTCATCGGACCTCTTAATCCATAAAGG
          1 ATTCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCCGTAAAGG

                   *                                    *        
        480 ATTCATAAACTCACGATGACACTTAGTCATCGGGACCTCTTAATTCGTAAAGG
          1 ATTCATATACTCACGATGACACTTAGTCATC-GGACCTCTTAATCCGTAAAGG

                      *                   *                     
        533 ATTCATATACCCACGATGACACTTAGTCATTGGACCTCTTAATCCGTAAAGG
          1 ATTCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCCGTAAAGG

                                                                
        585 ATTCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCCGTAAAGG
          1 ATTCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCCGTAAAGG

                      *                                         
        637 ATTCATATACCCACGATGACACTTAGTCATCGGACCTCTTAATCCGTAAAGG
          1 ATTCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCCGTAAAGG

                          *                *        
        689 ATTCATATACTCACAATGACACTTAGTCATCAGACCTCTT
          1 ATTCATATACTCACGATGACACTTAGTCATCGGACCTCTT

        729 CATTTATGGC


Statistics
Matches: 281,  Mismatches: 18, Indels: 4
        0.93            0.06        0.01

Matches are distributed among these distances:
  52  233  0.83
  53   48  0.17

ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28


Consensus pattern (52 bp):   
ATTCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCCGTAAAGG

Done.