Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004575.1 Kokia drynarioides strain JFW-HI SEQ_118061, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2572
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35


Found at i:678 original size:2 final size:2

Alignment explanation


    Indices: 673--708  Score: 72
    Period size: 2  Copynumber: 18.0  Consensus size: 2

        663 AAACAAACAA

                                                                 
        673 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        709 TGGAAAATAT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   34  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:826 original size:20 final size:21

Alignment explanation


    Indices: 801--846  Score: 58
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        791 TTTCAATATT

                  *              
        801 TTTTTAGAA-ATATTAAGTAA
          1 TTTTTACAATATATTAAGTAA

                      *      *   
        821 TTTTTACAATTTATTAATTAA
          1 TTTTTACAATATATTAAGTAA

                 
        842 TTTTT
          1 TTTTT

        847 TTCTCAAGAG


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  20    8  0.36
  21   14  0.64

ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57


Consensus pattern (21 bp):   
TTTTTACAATATATTAAGTAA
Done.