Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004580.1 Kokia drynarioides strain JFW-HI SEQ_118068, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.39


Found at i:424 original size:55 final size:55

Alignment explanation


    Indices: 340--449  Score: 220
    Period size: 55  Copynumber: 2.0  Consensus size: 55

        330 ATCCAACCAC

                                                                   
        340 AAGCTCTCAAATCTAATTATCACGAATTTACATATTAAGAACATGACATAATTAT
          1 AAGCTCTCAAATCTAATTATCACGAATTTACATATTAAGAACATGACATAATTAT

                                                                   
        395 AAGCTCTCAAATCTAATTATCACGAATTTACATATTAAGAACATGACATAATTAT
          1 AAGCTCTCAAATCTAATTATCACGAATTTACATATTAAGAACATGACATAATTAT

        450 CACTAAGTAT


Statistics
Matches: 55,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  55   55  1.00

ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33


Consensus pattern (55 bp):   
AAGCTCTCAAATCTAATTATCACGAATTTACATATTAAGAACATGACATAATTAT
Done.