genome.fa.s4583.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004583.1 Kokia drynarioides strain JFW-HI SEQ_118072, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26473

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20--823	429	1.9	429	88	1	1234	28	7	38	24	1.83
449--2320	486	4.0	473	84	4	2274	31	7	37	24	1.83
2441--2505	24	2.7	24	90	4	87	43	18	13	24	1.87
2702--2836	6	22.5	6	75	3	101	46	14	25	14	1.81
2677--2824	36	4.3	34	73	14	117	45	13	24	16	1.83
2702--2836	24	5.6	24	74	6	112	46	14	25	14	1.81
2808--2848	18	2.3	18	86	0	55	48	7	26	17	1.73
2815--2861	24	2.0	24	83	8	60	51	6	27	14	1.67
2992--3174	24	7.6	24	87	3	235	42	14	15	27	1.86
3529--3582	24	2.2	24	93	0	81	46	14	14	24	1.83
3778--4030	18	14.7	18	74	16	159	45	15	25	14	1.83
3771--4029	42	6.0	42	83	7	313	45	14	24	14	1.83
3783--4030	24	10.3	24	84	6	247	45	15	25	14	1.83
4093--4202	33	3.2	33	89	7	157	8	10	45	36	1.68
12089--12142	18	3.0	18	86	0	63	14	35	9	40	1.78
12256--12307	6	8.7	6	82	0	50	15	23	13	48	1.80
12256--12307	18	2.9	18	79	0	59	15	23	13	48	1.80
12257--12309	24	2.2	24	86	0	70	16	24	11	47	1.80
12421--12612	6	32.0	6	78	0	159	15	28	15	41	1.86
12421--12620	42	4.8	42	83	0	229	15	28	14	42	1.86
12613--13068	198	2.3	201	83	4	564	19	32	6	41	1.77
12962--13122	54	3.0	54	86	3	252	16	34	5	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12769--13506	252	2.9	252	89	2	1077	19	34	6	39	1.77
13208--13374	54	3.1	54	90	0	271	17	37	4	40	1.70
13735--14032	165	1.8	165	81	4	377	22	36	7	33	1.82
15616--15641	11	2.4	11	100	0	52	0	0	7	92	0.39
19204--19407	66	3.1	65	83	1	255	23	48	4	23	1.70
19368--19428	18	3.4	18	66	8	52	19	52	1	26	1.55
19368--19443	36	2.1	36	90	0	116	18	52	2	26	1.58
19308--19509	102	2.0	102	84	1	262	21	47	5	25	1.73
19236--19576	168	2.0	168	91	1	567	22	47	4	24	1.71
19410--20220	66	12.3	66	75	6	667	25	45	5	23	1.74
19204--19638	234	1.9	234	85	1	613	23	47	5	24	1.71
19807--19875	36	1.9	36	87	0	102	20	47	8	23	1.77
19899--19975	36	2.1	36	80	4	93	19	53	3	23	1.62
19735--20040	99	3.0	102	86	3	467	24	48	5	22	1.71
20162--20360	105	1.9	105	85	2	274	26	44	3	25	1.70
25912--26010	48	2.1	48	82	0	117	22	43	11	23	1.85
26004--26080	36	2.1	36	82	0	100	14	49	3	32	1.61
26047--26402	54	6.1	54	73	15	291	22	46	5	25	1.72
26101--26465	66	5.9	66	73	16	354	22	46	5	26	1.73
25896--26198	156	2.0	150	83	3	381	20	45	6	26	1.75
26040--26473	120	3.6	120	91	2	707	22	46	5	25	1.72
25896--26191	150	2.0	145	80	7	324	20	45	6	26	1.76

Tables:   1

The End!