Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004590.1 Kokia drynarioides strain JFW-HI SEQ_118080, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5547
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.36


Found at i:2179 original size:21 final size:21

Alignment explanation


    Indices: 2155--2198  Score: 79
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       2145 CCGCTTCGGG

                                 
       2155 TAACAAGGTTAACGTCCTTCC
          1 TAACAAGGTTAACGTCCTTCC

                        *        
       2176 TAACAAGGTTAATGTCCTTCC
          1 TAACAAGGTTAACGTCCTTCC

              
       2197 TA
          1 TA

       2199 TGTTCCCCCT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.30, C:0.25, G:0.14, T:0.32


Consensus pattern (21 bp):   
TAACAAGGTTAACGTCCTTCC
Done.