Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004591.1 Kokia drynarioides strain JFW-HI SEQ_118081, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1677
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37


Found at i:1522 original size:31 final size:30

Alignment explanation


    Indices: 1460--1522  Score: 85
    Period size: 31  Copynumber: 2.1  Consensus size: 30

       1450 ATAGTTGGAT

                                          
       1460 CTAAATTTTGAAATTTAAAAAGTAAAGAAA
          1 CTAAATTTTGAAATTTAAAAAGTAAAGAAA

                                             
       1490 CTAAATTTT-AAATTTATGAAAAGTACAA-AAA
          1 CTAAATTTTGAAATTTA--AAAAGTA-AAGAAA

              
       1521 CT
          1 CT

       1523 TATGAGGTAT


Statistics
Matches: 30,  Mismatches: 0, Indels: 5
        0.86            0.00        0.14

Matches are distributed among these distances:
  29    7  0.23
  30    9  0.30
  31   12  0.40
  32    2  0.07

ACGTcount: A:0.54, C:0.06, G:0.08, T:0.32


Consensus pattern (30 bp):   
CTAAATTTTGAAATTTAAAAAGTAAAGAAA
Done.