Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004594.1 Kokia drynarioides strain JFW-HI SEQ_118085, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 724

Length: 1208
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35


Found at i:703 original size:221 final size:221

Alignment explanation


    Indices: 1--1208  Score: 1836
    Period size: 221  Copynumber: 5.5  Consensus size: 221

                                  *                                          
          1 CAGGATTTTAATTTTAATTTTAATTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTG
          1 CAGGATTTTAATTTTAATTTTATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTG

                            *  *     **                                      
         66 ATGTGGCGTAAAACTAATGCAAAAGATACACAAATGA-GTGGTGTCACTGTTTCATTCAATCCTT
         66 ATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTT

                        *                                     *              
        130 TTCCATTGAAGAGGAGAAAGGATTGTATAAAACAGGGATATTATCCCTTTTCAATAGTTTTATGC
        131 TTCCATTGAAGAAGAGAAAGGATTGTATAAAACAGGGATATTATCCCTTTCCAATAGTTTTATGC

                *                     
        195 CACACCAACAATTTCATCCTGTATTT
        196 CACATCAACAATTTCATCCTGTATTT

                                *                                            
        221 CAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTG
          1 CAGGATTTTAATTTTAATTTTATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTG

              *               *                                              
        286 ATATGGCGTAAAACTATTAGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTT
         66 ATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTT

             *                                           *                   
        351 TCCCATTGAAGAAGAG-AAGGATTGTATAAAACAGGGATATTATCTCTTTCCAATAGTTTTATGC
        131 TTCCATTGAAGAAGAGAAAGGATTGTATAAAACAGGGATATTATCCCTTTCCAATAGTTTTATGC

                                 *    
        415 CACATCAACAATTTCATCCTGAATTT
        196 CACATCAACAATTTCATCCTGTATTT

                     *          *      *               *                     
        441 CAGGATTTTTATTTTAATTTGATTTTTACAGGATGAAAATGTTAAAATTAAGAATGAAAATACTG
          1 CAGGATTTTAATTTTAATTTTATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTG

                         *               **         *     *                * 
        506 ATGTGGCGTAAAATTATTGGAAAAGGGACTGAAATGACGTTGTGTCGCTGTTAT-ATTCAATCAT
         66 ATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTT-TCATTCAATCCT

                                         *     *           *        *        
        570 TTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAAGGATATTATCCATTTCCAATTGTTTTATG
        130 TTTCCATTGAAGAAGAGAAAGGATTGTATAAAACAGGGATATTATCCCTTTCCAATAGTTTTATG

                              **        
        635 CCACATCAACAATTTCATATTGTACTTT
        195 CCACATCAACAATTTCATCCTGTA-TTT

                            *                                                
        663 -AGGATTTTAATTTTATTTTTATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTG
          1 CAGGATTTTAATTTTAATTTTATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTG

                  *         *                                            *   
        727 ATGTGGTGTAAAACTAATGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATTCTT
         66 ATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTT

              *                                                    *         
        792 TTTCATTGAA-AAGGAGAAAGGATTGTATAAAACAGGGATATTATCCCTTTCCAACAGTTTTATG
        131 TTCCATTGAAGAA-GAGAAAGGATTGTATAAAACAGGGATATTATCCCTTTCCAATAGTTTTATG

                                        
        856 CCACA-CTAACAATTTCATCCTGTATTT
        195 CCACATC-AACAATTTCATCCTGTATTT

                   * *         *          *                                * 
        883 CAGGATTCTGATTTTAA-TATATTTTTTTCTGGATGAAAATGTTGAAATTAAGAATGAAAATAAT
          1 CAGGATTTTAATTTTAATTTTA-TTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACT

               *             *  *                                            
        947 GATATGGCGTAAAACTACTGTAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCT
         65 GATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCT

                                     *   *    *                   *          
       1012 TTTCCATTGAAGAAGAGAAAGGATTCTATGAAACTGGGATATTATCCCTTTCCATTAGTTTTATG
        130 TTTCCATTGAAGAAGAGAAAGGATTGTATAAAACAGGGATATTATCCCTTTCCAATAGTTTTATG

                                  *    
       1077 CCACATCAACAATTTCATCCTGAATTT
        195 CCACATCAACAATTTCATCCTGTATTT

                *                         *            *                     
       1104 CAGGCTTTTAATTTTAATTTTATTTTTTCAAGATGAAAATGTTAAAATTAAGAATGAAAATACTG
          1 CAGGATTTTAATTTTAATTTTATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTG

                              *             *       
       1169 ATGTGGCGTAAAACTATTAGAAAAGGGACACAGATGACGT
         66 ATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGT


Statistics
Matches: 889,  Mismatches: 87, Indels: 23
        0.89            0.09        0.02

Matches are distributed among these distances:
 220  306  0.34
 221  574  0.65
 222    9  0.01

ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35


Consensus pattern (221 bp):   
CAGGATTTTAATTTTAATTTTATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTG
ATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTT
TTCCATTGAAGAAGAGAAAGGATTGTATAAAACAGGGATATTATCCCTTTCCAATAGTTTTATGC
CACATCAACAATTTCATCCTGTATTT

Done.