Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01004601.1 Kokia drynarioides strain JFW-HI SEQ_118100, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15387
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.35
Found at i:26 original size:17 final size:17
Alignment explanation
Indices: 1--38 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
* *
1 TAAATTTAAATTTCAAA
1 TAAACTTAAATTTAAAA
18 TAAACTTAAATTTAAAA
1 TAAACTTAAATTTAAAA
35 TAAA
1 TAAA
39 AATAAATTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (17 bp):
TAAACTTAAATTTAAAA
Found at i:41 original size:23 final size:22
Alignment explanation
Indices: 1--52 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
* **
1 TAAATTTAAATTTCAAATAAACT
1 TAAATTTAAAATAAAAATAAA-T
24 TAAATTTAAAATAAAAATAAAT
1 TAAATTTAAAATAAAAATAAAT
*
46 TCAATTT
1 TAAATTT
53 CCAATGGGCC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 7 0.28
23 18 0.72
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (22 bp):
TAAATTTAAAATAAAAATAAAT
Found at i:44 original size:17 final size:17
Alignment explanation
Indices: 7--46 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
1 TAAATT
* **
7 TAAATTTCAAATAAACT
1 TAAATTTAAAATAAAAA
24 TAAATTTAAAATAAAAA
1 TAAATTTAAAATAAAAA
41 TAAATT
1 TAAATT
47 CAATTTCCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAATTTAAAATAAAAA
Found at i:6224 original size:29 final size:28
Alignment explanation
Indices: 6191--6284 Score: 91
Period size: 28 Copynumber: 3.2 Consensus size: 28
6181 CAAAAGTACG
* *
6191 ATTTTTGGATGCCCGGGGGTAAAATGGTA
1 ATTTTTGGA-GCTCGGGGGTAAAATGATA
* *
6220 ATTTTT-GAGTTTCGGGGGTAAAACGATA
1 ATTTTTGGAG-CTCGGGGGTAAAATGATA
* *
6248 ATTTTTGGACACTCGGGGGTGAAATTGATA
1 ATTTTTGGA-GCTCGGGGGT-AAAATGATA
6278 ATTTTTG
1 ATTTTTG
6285 AATGTTCGGG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
27 1 0.02
28 22 0.42
29 16 0.30
30 14 0.26
ACGTcount: A:0.26, C:0.09, G:0.30, T:0.36
Consensus pattern (28 bp):
ATTTTTGGAGCTCGGGGGTAAAATGATA
Found at i:6294 original size:30 final size:28
Alignment explanation
Indices: 6204--6459 Score: 101
Period size: 30 Copynumber: 8.8 Consensus size: 28
6194 TTTGGATGCC
* *
6204 CGGGGGTAAAATGGTAATTTTTGAGTTT
1 CGGGGGTAAAATGATAATTTTTGAATTT
* *
6232 CGGGGGTAAAACGATAATTTTTGGACA-CT
1 CGGGGGTAAAATGATAATTTTT-GA-ATTT
*
6261 CGGGGGTGAAATTGATAATTTTTGAATGTT
1 CGGGGGT-AAAATGATAATTTTTGAAT-TT
** ** * * *
6291 CGGGCATAAAACAAAAAATTTTGGAAGTT
1 CGGGGGTAAAA-TGATAATTTTTGAATTT
** *
6320 CGAGGGCAAAAATG-TAATTTTTTTGAAGTT
1 CG-GGGGTAAAATGATAA--TTTTTGAATTT
* * * *
6350 CAGAGGTAAAATGGTAATTTTTGAAAATT
1 CGGGGGTAAAATGATAATTTTTG-AATTT
** *
6379 CGGGGCAAAAATG-TAATTTTTAAAAAGTTT
1 CGGGGGTAAAATGATAATTTTT--GAA-TTT
* **
6409 AGGGTTTAAAATG-TAATTTTTGTGAAGTTT
1 CGGGGGTAAAATGATAA-TTTT-TGAA-TTT
*
6439 -AGGGGTAAAATG-TAATTTTTG
1 CGGGGGTAAAATGATAATTTTTG
6460 TGAAGTTCGA
Statistics
Matches: 171, Mismatches: 41, Indels: 33
0.70 0.17 0.13
Matches are distributed among these distances:
27 2 0.01
28 41 0.24
29 54 0.32
30 69 0.40
31 4 0.02
32 1 0.01
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (28 bp):
CGGGGGTAAAATGATAATTTTTGAATTT
Found at i:6341 original size:29 final size:29
Alignment explanation
Indices: 6309--6478 Score: 125
Period size: 29 Copynumber: 5.8 Consensus size: 29
6299 AAACAAAAAA
6309 TTTTGGAAGTTCGAGGGCAAAAATGTAATT
1 TTTTGGAAGTTCGAGGGCAAAAATGTAA-T
* *
6339 TTTTTGAAGTTC-AGAGG-TAAAATGGTAAT
1 TTTTGGAAGTTCGAG-GGCAAAAAT-GTAAT
* *
6368 TTTTGAAAATTCG-GGGCAAAAATGTAAT
1 TTTTGGAAGTTCGAGGGCAAAAATGTAAT
** * **
6396 TTTTAAAAAGTT-TAGGGTTTAAAATGTAAT
1 TTTT-GGAAGTTCGAGGG-CAAAAATGTAAT
* **
6426 TTTTGTGAAGTT-TAGGGGTAAAATGTAAT
1 TTTTG-GAAGTTCGAGGGCAAAAATGTAAT
6455 TTTTGTGAAGTTCGAGGGTCAAAA
1 TTTTG-GAAGTTCGAGGG-CAAAA
6479 TATGATTTTT
Statistics
Matches: 113, Mismatches: 17, Indels: 19
0.76 0.11 0.13
Matches are distributed among these distances:
28 11 0.10
29 54 0.48
30 45 0.40
31 3 0.03
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.37
Consensus pattern (29 bp):
TTTTGGAAGTTCGAGGGCAAAAATGTAAT
Found at i:6407 original size:58 final size:58
Alignment explanation
Indices: 6309--6430 Score: 149
Period size: 58 Copynumber: 2.1 Consensus size: 58
6299 AAACAAAAAA
* * ***
6309 TTTTGGAAGTTCGAGGGCAAAAATGTAATTTTTTTGAAGTTCAGAGG-TAAAATGGTAAT
1 TTTTGAAAATTCGAGGGCAAAAATGTAATTTTTAAAAAGTTCAG-GGTTAAAAT-GTAAT
*
6368 TTTTGAAAATTCG-GGGCAAAAATGTAATTTTTAAAAAGTTTAGGGTTTAAAATGTAAT
1 TTTTGAAAATTCGAGGGCAAAAATGTAATTTTTAAAAAGTTCAGGG-TTAAAATGTAAT
6426 TTTTG
1 TTTTG
6431 TGAAGTTTAG
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
57 2 0.04
58 36 0.65
59 17 0.31
ACGTcount: A:0.35, C:0.04, G:0.22, T:0.39
Consensus pattern (58 bp):
TTTTGAAAATTCGAGGGCAAAAATGTAATTTTTAAAAAGTTCAGGGTTAAAATGTAAT
Found at i:6479 original size:59 final size:57
Alignment explanation
Indices: 6323--6496 Score: 163
Period size: 59 Copynumber: 3.0 Consensus size: 57
6313 GGAAGTTCGA
* *
6323 GGGCAAAAATGTAATTTTTTTGAAGTTCAGAGGTAAAATGGTAA-TTTTTGAAAATTCG
1 GGGCAAAAATGTAATTTTTATGAAGTTCAG-GGTAAAAT-GTAATTTTTTGAAAATTAG
** * **
6381 GGGCAAAAATGTAATTTTTAAAAAGTTTAGGGTTTAAAATGTAATTTTTGTGAAGTTTAG
1 GGGCAAAAATGTAATTTTTATGAAGTTCAGGG--TAAAATGTAATTTTT-TGAAAATTAG
* * * * *
6441 GGG-TAAAATGTAATTTTTGTGAAGTTCGAGGGTCAAAATATGATTTTTAGAAAATT
1 GGGCAAAAATGTAATTTTTATGAAGTTC-AGGGT-AAAATGTAATTTTTTGAAAATT
6497 TAATGGTCGA
Statistics
Matches: 93, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
57 2 0.02
58 36 0.39
59 41 0.44
60 14 0.15
ACGTcount: A:0.36, C:0.03, G:0.22, T:0.38
Consensus pattern (57 bp):
GGGCAAAAATGTAATTTTTATGAAGTTCAGGGTAAAATGTAATTTTTTGAAAATTAG
Found at i:8106 original size:22 final size:22
Alignment explanation
Indices: 8075--8134 Score: 95
Period size: 22 Copynumber: 2.8 Consensus size: 22
8065 GCGGCTTGGC
8075 AGTTAC-GGTGGTGCAAAGGCA
1 AGTTACTGGTGGTGCAAAGGCA
* *
8096 AGTTGCTGGTGGTGCAAAGGTA
1 AGTTACTGGTGGTGCAAAGGCA
8118 AGTTACTGGTGGTGCAA
1 AGTTACTGGTGGTGCAA
8135 CTTGGTTGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
21 5 0.14
22 30 0.86
ACGTcount: A:0.25, C:0.12, G:0.38, T:0.25
Consensus pattern (22 bp):
AGTTACTGGTGGTGCAAAGGCA
Found at i:8367 original size:18 final size:19
Alignment explanation
Indices: 8346--8398 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 19
8336 TTTTAATATT
*
8346 AATTTTTAATTT-AAAATA
1 AATTTTAAATTTAAAAATA
8364 AA-TTTAAATTTAAAAATA
1 AATTTTAAATTTAAAAATA
*
8382 AA-TTAAAATTTAAAAAT
1 AATTTTAAATTTAAAAAT
8399 TAAAAGTTGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.25
18 24 0.75
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AATTTTAAATTTAAAAATA
Found at i:8375 original size:17 final size:17
Alignment explanation
Indices: 8353--8396 Score: 70
Period size: 18 Copynumber: 2.5 Consensus size: 17
8343 ATTAATTTTT
*
8353 AATTTAAAATAAATTTA
1 AATTTAAAATAAATTAA
8370 AATTTAAAAATAAATTAA
1 AATTT-AAAATAAATTAA
8388 AATTTAAAA
1 AATTTAAAA
8397 ATTAAAAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 9 0.36
18 16 0.64
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AATTTAAAATAAATTAA
Found at i:13058 original size:20 final size:20
Alignment explanation
Indices: 12988--13094 Score: 64
Period size: 20 Copynumber: 5.4 Consensus size: 20
12978 CATTTTTCTA
* *
12988 ATAAAAAATCATAACAAAATT
1 ATAAAAATTCATAA-AAACTT
**
13009 AT-AAAATAAAATAAAAAC-T
1 ATAAAAAT-TCATAAAAACTT
*
13028 AGAAAACATTCATAAAAACTT
1 ATAAAA-ATTCATAAAAACTT
13049 ATAAAAATTC-TAATAAA-TT
1 ATAAAAATTCATAA-AAACTT
* *
13068 -TAAAATATTTAT-AAAATTT
1 ATAAAA-ATTCATAAAAACTT
13087 ATAAAAAT
1 ATAAAAAT
13095 ATAAATAAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 20
0.70 0.09 0.21
Matches are distributed among these distances:
18 8 0.12
19 15 0.22
20 31 0.46
21 14 0.21
ACGTcount: A:0.63, C:0.07, G:0.01, T:0.30
Consensus pattern (20 bp):
ATAAAAATTCATAAAAACTT
Found at i:13118 original size:9 final size:9
Alignment explanation
Indices: 13003--13118 Score: 69
Period size: 9 Copynumber: 12.4 Consensus size: 9
12993 AAATCATAAC
13003 AAAATTATA
1 AAAATTATA
**
13012 AAATAAAATA
1 AAA-ATTATA
* *
13022 AAAACTAGA
1 AAAATTATA
13031 AAACATTCATA
1 AAA-ATT-ATA
13042 AAAACTTATA
1 AAAA-TTATA
*
13052 AAAATTCTA
1 AAAATTATA
13061 ATAAATT-TA
1 A-AAATTATA
13070 AAATATTTATA
1 AAA-A-TTATA
*
13081 AAATTTATA
1 AAAATTATA
13090 AAAA-TATA
1 AAAATTATA
*
13098 AATAA-AAT-
1 AA-AATTATA
13106 AAAATTATA
1 AAAATTATA
13115 AAAA
1 AAAA
13119 ATTCATTTAT
Statistics
Matches: 84, Mismatches: 12, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
7 2 0.02
8 12 0.14
9 34 0.40
10 24 0.29
11 12 0.14
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.30
Consensus pattern (9 bp):
AAAATTATA
Found at i:13119 original size:10 final size:10
Alignment explanation
Indices: 12988--13121 Score: 56
Period size: 10 Copynumber: 14.0 Consensus size: 10
12978 CATTTTTCTA
*
12988 ATAAAAAATC
1 ATAAAAAATT
12998 ATAACAAAATT
1 ATAA-AAAATT
*
13009 ATAAAATAA-A
1 ATAAAA-AATT
*
13019 AT-AAAAACT
1 ATAAAAAATT
* *
13028 AGAAAACATT
1 ATAAAAAATT
*
13038 CATAAAAACTT
1 -ATAAAAAATT
13049 AT-AAAAATT
1 ATAAAAAATT
* *
13058 CTAATAAATT
1 ATAAAAAATT
*
13068 -TAAAATATT
1 ATAAAAAATT
*
13077 -TATAAAATT
1 ATAAAAAATT
13086 -TATAAAAA-T
1 ATA-AAAAATT
13095 ATAAATAAA--
1 ATAAA-AAATT
13104 AT--AAAATT
1 ATAAAAAATT
13112 ATAAAAAATT
1 ATAAAAAATT
13122 CATTTATTGC
Statistics
Matches: 94, Mismatches: 17, Indels: 26
0.69 0.12 0.19
Matches are distributed among these distances:
6 3 0.03
7 1 0.01
8 4 0.04
9 32 0.34
10 36 0.38
11 18 0.19
ACGTcount: A:0.64, C:0.05, G:0.01, T:0.30
Consensus pattern (10 bp):
ATAAAAAATT
Found at i:14593 original size:59 final size:58
Alignment explanation
Indices: 14464--14897 Score: 498
Period size: 59 Copynumber: 7.3 Consensus size: 58
14454 TTGACATTCG
* * * *
14464 GGGGTAAAAATGGTAATTTATGGAAGTTTTGGGGTCAAAAATGAGATTTTTGG--GTATTCGG
1 GGGGT-AAAATGGTAATTTTTGGAAGTTTTGAGGTC-AAAATGGGATTTTTGGAAGT-TT--A
* * *
14525 GGGGTAAAATGATAATTTTTGGAAGTTTTAAGGTCAAAATGGGATTTTTGGAAGTTTG
1 GGGGTAAAATGGTAATTTTTGGAAGTTTTGAGGTCAAAATGGGATTTTTGGAAGTTTA
* * ** *
14583 GGGGTAAAAATGGTAATTTATGGAAGTTTT-AGGGTCAAAAATGAGATTTTTGGGTGTTTG
1 GGGGT-AAAATGGTAATTTTTGGAAGTTTTGA-GGTC-AAAATGGGATTTTTGGAAGTTTA
* *
14643 GGGGTAAAATGATAATTTTTGGAAGTTTT-AGGGTCAAAATGGGATTTTTGGAAGTTCA
1 GGGGTAAAATGGTAATTTTTGGAAGTTTTGA-GGTCAAAATGGGATTTTTGGAAGTTTA
* * * ** *
14701 AGGATAAAATGGTAATTTTTGGAAGTTTTGAGGTTTAAAAATTAGATTTTTAGAAGTTTA
1 GGGGTAAAATGGTAATTTTTGGAAGTTTTGAGG--TCAAAATGGGATTTTTGGAAGTTTA
* * *
14761 GGGATAAAATGGTAATTTTTGAAAGTTTTGAGGTTAAAAATGGGATTTTTGGAAGTTTA
1 GGGGTAAAATGGTAATTTTTGGAAGTTTTGAGG-TCAAAATGGGATTTTTGGAAGTTTA
*
14820 GGGGTAAAATGGTAATTTTTGGAAGTTTCGAGGTCAAAAATGGGATTTTTGGAAGTTTA
1 GGGGTAAAATGGTAATTTTTGGAAGTTTTGAGGTC-AAAATGGGATTTTTGGAAGTTTA
*
14879 AGGGTAAAATGGTAATTTT
1 GGGGTAAAATGGTAATTTT
14898 CAAACAATTT
Statistics
Matches: 329, Mismatches: 35, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
58 54 0.16
59 164 0.50
60 104 0.32
61 7 0.02
ACGTcount: A:0.32, C:0.02, G:0.29, T:0.37
Consensus pattern (58 bp):
GGGGTAAAATGGTAATTTTTGGAAGTTTTGAGGTCAAAATGGGATTTTTGGAAGTTTA
Found at i:14685 original size:118 final size:117
Alignment explanation
Indices: 14464--14897 Score: 550
Period size: 118 Copynumber: 3.7 Consensus size: 117
14454 TTGACATTCG
* *
14464 GGGGTAAAAATGGTAATTTATGGAAGTTTTGGGGTCAAAAATGAGATTTTTGG--GTATTCGGGG
1 GGGGT-AAAATGGTAATTTATGGAAGTTTTAGGGTCAAAAATGAGATTTTTGGAAGT-TT--AGG
* *
14527 GGTAAAATGATAATTTTTGGAAGTTTTAAGGTCAAAATGGGATTTTTGGAAGTTTG
62 GGTAAAATGATAATTTTTGGAAGTTTTAGGGTCAAAATGGGATTTTTGGAAGTTTA
** *
14583 GGGGTAAAAATGGTAATTTATGGAAGTTTTAGGGTCAAAAATGAGATTTTTGGGTGTTTGGGGGT
1 GGGGT-AAAATGGTAATTTATGGAAGTTTTAGGGTCAAAAATGAGATTTTTGGAAGTTTAGGGGT
*
14648 AAAATGATAATTTTTGGAAGTTTTAGGGTCAAAATGGGATTTTTGGAAGTTCA
65 AAAATGATAATTTTTGGAAGTTTTAGGGTCAAAATGGGATTTTTGGAAGTTTA
* * * * * * * *
14701 AGGATAAAATGGTAATTTTTGGAAGTTTTGAGGTTTAAAAATTAGATTTTTAGAAGTTTAGGGAT
1 GGGGTAAAATGGTAATTTATGGAAGTTTT-AGGGTCAAAAATGAGATTTTTGGAAGTTTAGGGGT
* * * *
14766 AAAATGGTAATTTTTGAAAGTTTTGAGGTTAAAAATGGGATTTTTGGAAGTTTA
65 AAAATGATAATTTTTGGAAGTTTT-AGGGTCAAAATGGGATTTTTGGAAGTTTA
* * * *
14820 GGGGTAAAATGGTAATTTTTGGAAG-TTTCGAGGTCAAAAATGGGATTTTTGGAAGTTTAAGGGT
1 GGGGTAAAATGGTAATTTATGGAAGTTTTAG-GGTCAAAAATGAGATTTTTGGAAGTTTAGGGGT
*
14884 AAAATGGTAATTTT
65 AAAATGATAATTTT
14898 CAAACAATTT
Statistics
Matches: 280, Mismatches: 30, Indels: 11
0.87 0.09 0.03
Matches are distributed among these distances:
117 24 0.09
118 151 0.54
119 101 0.36
120 2 0.01
121 2 0.01
ACGTcount: A:0.32, C:0.02, G:0.29, T:0.37
Consensus pattern (117 bp):
GGGGTAAAATGGTAATTTATGGAAGTTTTAGGGTCAAAAATGAGATTTTTGGAAGTTTAGGGGTA
AAATGATAATTTTTGGAAGTTTTAGGGTCAAAATGGGATTTTTGGAAGTTTA
Found at i:14896 original size:29 final size:30
Alignment explanation
Indices: 14465--14897 Score: 296
Period size: 29 Copynumber: 14.6 Consensus size: 30
14455 TGACATTCGG
* **
14465 GGGTAAAAATGGTAATTTATGGAAGTTTTG
1 GGGTAAAAATGGTAATTTTTGGAAGTTTAA
**
14495 GGGTCAAAAAT-G-AGATTTTTGG--GTATTCGGG
1 GGGT-AAAAATGGTA-ATTTTTGGAAGT-TT--AA
*
14526 GGGT-AAAATGATAATTTTTGGAAGTTTTAA
1 GGGTAAAAATGGTAATTTTTGGAAG-TTTAA
* * **
14556 -GGTCAAAATGG-GATTTTTGGAAGTTTGG
1 GGGTAAAAATGGTAATTTTTGGAAGTTTAA
* *
14584 GGGTAAAAATGGTAATTTATGGAAGTTTTA
1 GGGTAAAAATGGTAATTTTTGGAAGTTTAA
** **
14614 GGGTCAAAAAT-G-AGATTTTTGGGTGTTTGG
1 GGGT-AAAAATGGTA-ATTTTTGGAAGTTTAA
* *
14644 GGGT-AAAATGATAATTTTTGGAAGTTTTA
1 GGGTAAAAATGGTAATTTTTGGAAGTTTAA
* * *
14673 GGGTCAAAATGG-GATTTTTGGAAGTTCAA
1 GGGTAAAAATGGTAATTTTTGGAAGTTTAA
* *
14702 GGAT-AAAATGGTAATTTTTGGAAGTTTTGA
1 GGGTAAAAATGGTAATTTTTGGAAG-TTTAA
* *
14732 GGTTTAAAAAT--TAGATTTTTAGAAGTTT-A
1 GG-GTAAAAATGGTA-ATTTTTGGAAGTTTAA
* *
14761 GGG-ATAAAATGGTAATTTTTGAAAGTTTTGA
1 GGGTA-AAAATGGTAATTTTTGGAAG-TTTAA
* * *
14792 GGTTAAAAATGG-GATTTTTGGAAGTTTAG
1 GGGTAAAAATGGTAATTTTTGGAAGTTTAA
*
14821 GGGT-AAAATGGTAATTTTTGGAAGTTT-C
1 GGGTAAAAATGGTAATTTTTGGAAGTTTAA
*
14849 GAGGTCAAAAATGG-GATTTTTGGAAGTTTAA
1 G-GGT-AAAAATGGTAATTTTTGGAAGTTTAA
14880 GGGT-AAAATGGTAATTTT
1 GGGTAAAAATGGTAATTTT
14898 CAAACAATTT
Statistics
Matches: 320, Mismatches: 48, Indels: 71
0.73 0.11 0.16
Matches are distributed among these distances:
27 1 0.00
28 37 0.12
29 117 0.37
30 108 0.34
31 47 0.15
32 9 0.03
33 1 0.00
ACGTcount: A:0.32, C:0.02, G:0.29, T:0.37
Consensus pattern (30 bp):
GGGTAAAAATGGTAATTTTTGGAAGTTTAA
Done.