Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004604.1 Kokia drynarioides strain JFW-HI SEQ_118103, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 684

Length: 1140
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41


Found at i:102 original size:21 final size:19

Alignment explanation


    Indices: 61--107  Score: 58
    Period size: 19  Copynumber: 2.4  Consensus size: 19

         51 TATCATTATA

                *              
         61 TTATAATAATATTATAAAT
          1 TTATTATAATATTATAAAT

              *                  
         80 TTTTTATAATATTATATATAT
          1 TTATTATAATATTATA-A-AT

                   
        101 TTATTAT
          1 TTATTAT

        108 TTATCTATAT


Statistics
Matches: 23,  Mismatches: 3, Indels: 2
        0.82            0.11        0.07

Matches are distributed among these distances:
  19   14  0.61
  20    1  0.04
  21    8  0.35

ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57


Consensus pattern (19 bp):   
TTATTATAATATTATAAAT

Found at i:806 original size:29 final size:30

Alignment explanation


    Indices: 774--832  Score: 84
    Period size: 29  Copynumber: 2.0  Consensus size: 30

        764 TATAGTTTAA

                          *               
        774 TGTGCAATTGTATATAT-AAACTTTGATTT
          1 TGTGCAATTGTATACATGAAACTTTGATTT

                     *           *        
        803 TGTGCAATTTTATACATGAAATTTTGATTT
          1 TGTGCAATTGTATACATGAAACTTTGATTT

        833 GATCCAATTC


Statistics
Matches: 26,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  29   15  0.58
  30   11  0.42

ACGTcount: A:0.31, C:0.07, G:0.14, T:0.49


Consensus pattern (30 bp):   
TGTGCAATTGTATACATGAAACTTTGATTT

Done.