Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004606.1 Kokia drynarioides strain JFW-HI SEQ_118107, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1671
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35


Found at i:112 original size:2 final size:2

Alignment explanation


    Indices: 102--150  Score: 89
    Period size: 2  Copynumber: 24.5  Consensus size: 2

         92 CTTAAAAAAT

                  *                                                       
        102 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                      
        144 TA TA TA T
          1 TA TA TA T

        151 TTGGAAATTA


Statistics
Matches: 45,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   2   45  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
TA

Done.