Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004608.1 Kokia drynarioides strain JFW-HI SEQ_118111, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18454
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34


Found at i:18423 original size:5 final size:5

Alignment explanation


    Indices: 18415--18449  Score: 52
    Period size: 5  Copynumber: 6.6  Consensus size: 5

      18405 AAAAAAATGG

                                                     
      18415 GAAAA GAAAA GAAAA GAAAA GAAAAA GAAAGA GAA
          1 GAAAA GAAAA GAAAA GAAAA G-AAAA GAAA-A GAA

      18450 CGAGA


Statistics
Matches: 28,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
   5   19  0.68
   6    9  0.32

ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00


Consensus pattern (5 bp):   
GAAAA

Found at i:18433 original size:15 final size:17

Alignment explanation


    Indices: 18415--18449  Score: 56
    Period size: 16  Copynumber: 2.2  Consensus size: 17

      18405 AAAAAAATGG

                             
      18415 GAAAAG-AAAAGAAA-A
          1 GAAAAGAAAAAGAAAGA

                             
      18430 GAAAAGAAAAAGAAAGA
          1 GAAAAGAAAAAGAAAGA

               
      18447 GAA
          1 GAA

      18450 CGAGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  15    6  0.33
  16    8  0.44
  17    4  0.22

ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00


Consensus pattern (17 bp):   
GAAAAGAAAAAGAAAGA
Done.