Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000461.1 Kokia drynarioides strain JFW-HI SEQ_111328, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2648
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:1301 original size:47 final size:47

Alignment explanation


    Indices: 1247--1340  Score: 188
    Period size: 47  Copynumber: 2.0  Consensus size: 47

       1237 TTTGTGTGGA

                                                           
       1247 CGCAAAGTGATGAAAACACCATAGGACGCAATGCATGCAAGGAAGTG
          1 CGCAAAGTGATGAAAACACCATAGGACGCAATGCATGCAAGGAAGTG

                                                           
       1294 CGCAAAGTGATGAAAACACCATAGGACGCAATGCATGCAAGGAAGTG
          1 CGCAAAGTGATGAAAACACCATAGGACGCAATGCATGCAAGGAAGTG

       1341 ATGGCTGCGT


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  47   47  1.00

ACGTcount: A:0.40, C:0.19, G:0.28, T:0.13


Consensus pattern (47 bp):   
CGCAAAGTGATGAAAACACCATAGGACGCAATGCATGCAAGGAAGTG
Done.