Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004610.1 Kokia drynarioides strain JFW-HI SEQ_118118, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 683

Length: 1139
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.38


Found at i:401 original size:21 final size:21

Alignment explanation


    Indices: 359--397  Score: 57
    Period size: 18  Copynumber: 2.0  Consensus size: 21

        349 CAAACGTTAA

                                 
        359 ATTCTAAGTCTTATAAATTAT
          1 ATTCTAAGTCTTATAAATTAT

                                 
        380 ATTC-AAGT-TTAT-AATTAT
          1 ATTCTAAGTCTTATAAATTAT

        398 TATAATTATT


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  18    6  0.33
  19    4  0.22
  20    4  0.22
  21    4  0.22

ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49


Consensus pattern (21 bp):   
ATTCTAAGTCTTATAAATTAT
Done.