Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004615.1 Kokia drynarioides strain JFW-HI SEQ_118124, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4533
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31


Found at i:242 original size:31 final size:30

Alignment explanation


    Indices: 207--269  Score: 81
    Period size: 30  Copynumber: 2.1  Consensus size: 30

        197 AAAATTACAC

                        *              *   
        207 TTTAACCCTTCTTAAAATGATAAAAATTTAA
          1 TTTAACCCTT-TAAAAATGATAAAAATATAA

                 *           *            
        238 TTTAATCCTTTAAAAATTATAAAAATATAA
          1 TTTAACCCTTTAAAAATGATAAAAATATAA

              
        268 TT
          1 TT

        270 AATTTATTTT


Statistics
Matches: 28,  Mismatches: 4, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  30   19  0.68
  31    9  0.32

ACGTcount: A:0.48, C:0.10, G:0.02, T:0.41


Consensus pattern (30 bp):   
TTTAACCCTTTAAAAATGATAAAAATATAA
Done.