Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004619.1 Kokia drynarioides strain JFW-HI SEQ_118131, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2314
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.34


Found at i:224 original size:51 final size:51

Alignment explanation


    Indices: 146--378  Score: 229
    Period size: 51  Copynumber: 4.6  Consensus size: 51

        136 TAAACGAAAG

                                  *        *                   
        146 GGTCCGATGACTAAGTGTCATCGTGAGTAAACGAATCCTTTACGGATTAAA
          1 GGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGATTAAA

              * *                               *      *       
        197 GGACTGATGACTAAGTGTCATCATGAGTAAATGAATACTTTACTGATTAAA
          1 GGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGATTAAA

            **   *                       *   *    * * *        
        248 ATTCCAATGACTAAGTGTCATCATGAGTAGATGCATCCATGATGGATTAAA
          1 GGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGATTAAA

                        *         *      *          *      **    
        299 GGTCCGATGACTCAGTGTCATCGTGA--ATATGAATTCCTATACGGAACAAGA
          1 GGTCCGATGACTAAGTGTCATCATGAGTAAATGAA-TCCTTTACGGATTAA-A

                                   *      
        350 GGTCCGATGACTATA-TGTCATCGTGAGTA
          1 GGTCCGATGACTA-AGTGTCATCATGAGTA

        379 TTAAATAAAA


Statistics
Matches: 145,  Mismatches: 32, Indels: 8
        0.78            0.17        0.04

Matches are distributed among these distances:
  49    5  0.03
  50    9  0.06
  51  129  0.89
  52    1  0.01
  53    1  0.01

ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29


Consensus pattern (51 bp):   
GGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGATTAAA

Done.