Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004620.1 Kokia drynarioides strain JFW-HI SEQ_118132, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2086
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33


Found at i:2020 original size:10 final size:10

Alignment explanation


    Indices: 2004--2036  Score: 50
    Period size: 10  Copynumber: 3.3  Consensus size: 10

       1994 TTTAATTATT

                      
       2004 AAAAAAT-TA
          1 AAAAAATATA

                       
       2013 AGAAAAATATA
          1 A-AAAAATATA

                      
       2024 AAAAAATATA
          1 AAAAAATATA

               
       2034 AAA
          1 AAA

       2037 TTATAAAATT


Statistics
Matches: 22,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
   9    1  0.05
  10   18  0.82
  11    3  0.14

ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18


Consensus pattern (10 bp):   
AAAAAATATA
Done.