Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004628.1 Kokia drynarioides strain JFW-HI SEQ_118148, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9947
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:2338 original size:24 final size:25

Alignment explanation


    Indices: 2311--2358  Score: 64
    Period size: 24  Copynumber: 2.0  Consensus size: 25

       2301 TGTAAAAACT

                               *      
       2311 AAAGA-AACAAATTAA-AGTAAAATA
          1 AAAGACAA-AAATTAACAGAAAAATA

                                    
       2335 AAAGACAAAAATTAACAGAAAAAT
          1 AAAGACAAAAATTAACAGAAAAAT

       2359 TTGCAAAGAC


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  24   12  0.57
  25    9  0.43

ACGTcount: A:0.71, C:0.06, G:0.08, T:0.15


Consensus pattern (25 bp):   
AAAGACAAAAATTAACAGAAAAATA
Done.