Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000463.1 Kokia drynarioides strain JFW-HI SEQ_111333, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6054
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33


Found at i:63 original size:18 final size:18

Alignment explanation


    Indices: 23--57  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

         13 TAAATAATAA

                        *     
         23 AATATTATTATTTATTAT
          1 AATATTATTATTAATTAT

                             
         41 AATATTATTATTAATTA
          1 AATATTATTATTAATTA

         58 ATATATCATT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57


Consensus pattern (18 bp):   
AATATTATTATTAATTAT
Done.