Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004639.1 Kokia drynarioides strain JFW-HI SEQ_118167, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9607
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Found at i:8608 original size:14 final size:15

Alignment explanation


    Indices: 8589--8617  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

       8579 TCATTCTCTT

                           
       8589 CATCATCTTA-GATC
          1 CATCATCTTATGATC

                           
       8603 CATCATCTTATGATC
          1 CATCATCTTATGATC

       8618 TACCATAATA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14   10  0.71
  15    4  0.29

ACGTcount: A:0.28, C:0.28, G:0.07, T:0.38


Consensus pattern (15 bp):   
CATCATCTTATGATC

Found at i:8749 original size:24 final size:24

Alignment explanation


    Indices: 8712--8787  Score: 107
    Period size: 24  Copynumber: 3.1  Consensus size: 24

       8702 AGAGTGGACA

                     *            *  
       8712 AAATAAAAACCATGAAAATATGGAC
          1 AAAT-AAAATCATGAAAATATGAAC

                              *     
       8737 AAATAAAATCATGAAAATGTGAAC
          1 AAATAAAATCATGAAAATATGAAC

                            *       
       8761 AAATAAAATCATGAAATTATGAAC
          1 AAATAAAATCATGAAAATATGAAC

               
       8785 AAA
          1 AAA

       8788 ACCTCAATAA


Statistics
Matches: 46,  Mismatches: 5, Indels: 1
        0.88            0.10        0.02

Matches are distributed among these distances:
  24   42  0.91
  25    4  0.09

ACGTcount: A:0.61, C:0.09, G:0.11, T:0.20


Consensus pattern (24 bp):   
AAATAAAATCATGAAAATATGAAC
Done.