Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004647.1 Kokia drynarioides strain JFW-HI SEQ_118177, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2112
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.31


Found at i:772 original size:16 final size:17

Alignment explanation


    Indices: 737--775  Score: 53
    Period size: 16  Copynumber: 2.3  Consensus size: 17

        727 GGGTTTAGAG

                         *    
        737 ATAAAACATCAAACTAAA
          1 ATAAAACA-CAAAATAAA

                             
        755 ATAAAACA-AAAATAAA
          1 ATAAAACACAAAATAAA

                 
        771 ATAAA
          1 ATAAA

        776 TAAGTTAAAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  16   12  0.60
  18    8  0.40

ACGTcount: A:0.74, C:0.10, G:0.00, T:0.15


Consensus pattern (17 bp):   
ATAAAACACAAAATAAA
Done.