Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000465.1 Kokia drynarioides strain JFW-HI SEQ_111337, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2477
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34


Found at i:2047 original size:22 final size:21

Alignment explanation


    Indices: 2022--2074  Score: 54
    Period size: 22  Copynumber: 2.4  Consensus size: 21

       2012 TTTACTTTCT

                                  
       2022 TTTTCTTTTTCTGCTTTAATGG
          1 TTTTCTTTTTCTGCTTT-ATGG

                       *        * 
       2044 TTTT-TTGTTTTTGCTTTATTG
          1 TTTTCTT-TTTCTGCTTTATGG

                      
       2065 TTTTGCTTTT
          1 TTTT-CTTTT

       2075 AATTTTAGTT


Statistics
Matches: 26,  Mismatches: 2, Indels: 6
        0.76            0.06        0.18

Matches are distributed among these distances:
  21    9  0.35
  22   15  0.58
  23    2  0.08

ACGTcount: A:0.06, C:0.09, G:0.13, T:0.72


Consensus pattern (21 bp):   
TTTTCTTTTTCTGCTTTATGG
Done.