Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004653.1 Kokia drynarioides strain JFW-HI SEQ_118189, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10202
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


Found at i:1756 original size:15 final size:15

Alignment explanation


    Indices: 1732--1765  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       1722 CGTGTGTATG

                        *  
       1732 TATTTATTTATTGTT
          1 TATTTATTTATTATT

                 *         
       1747 TATTTGTTTATTATT
          1 TATTTATTTATTATT

                
       1762 TATT
          1 TATT

       1766 AACATTGTTC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74


Consensus pattern (15 bp):   
TATTTATTTATTATT

Found at i:7401 original size:15 final size:15

Alignment explanation


    Indices: 7377--7410  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       7367 CGTGTGTATG

                        *  
       7377 TATTTATTTATTGTT
          1 TATTTATTTATTATT

                 *         
       7392 TATTTGTTTATTATT
          1 TATTTATTTATTATT

                
       7407 TATT
          1 TATT

       7411 AACATTGTTC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74


Consensus pattern (15 bp):   
TATTTATTTATTATT
Done.