Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004661.1 Kokia drynarioides strain JFW-HI SEQ_118204, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1167
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35


Found at i:58 original size:22 final size:22

Alignment explanation


    Indices: 33--79  Score: 69
    Period size: 22  Copynumber: 2.1  Consensus size: 22

         23 TCCAATGATA

                                   
         33 AATAAGATAAA-TAACCTAAGAT
          1 AATAAGA-AAATTAACCTAAGAT

                 *                
         55 AATAATAAAATTAACCTAAGAT
          1 AATAAGAAAATTAACCTAAGAT

               
         77 AAT
          1 AAT

         80 TATTCATATT


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  21    3  0.13
  22   20  0.87

ACGTcount: A:0.60, C:0.09, G:0.06, T:0.26


Consensus pattern (22 bp):   
AATAAGAAAATTAACCTAAGAT
Done.