genome.fa.s4662.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004662.1 Kokia drynarioides strain JFW-HI SEQ_118205, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65562

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
952--991	20	2.0	20	100	0	80	25	20	25	30	1.99
2384--2447	21	3.3	21	64	28	59	12	20	31	35	1.90
2359--2468	37	3.0	37	94	2	186	13	20	31	34	1.91
5437--5836	212	1.9	210	88	1	611	28	23	19	28	1.99
6565--6598	17	2.0	17	94	0	59	50	0	5	44	1.26
6792--6825	17	2.0	17	94	0	59	50	0	5	44	1.26
6555--7014	227	2.0	227	98	0	893	43	9	11	35	1.74
21481--21505	12	2.1	12	100	0	50	92	0	8	0	0.40
21483--21507	13	1.9	13	100	0	50	92	0	8	0	0.40
23593--23706	58	1.9	59	94	1	203	32	11	14	42	1.81
24482--24522	21	2.0	21	90	9	66	31	12	2	53	1.51
24968--25016	20	2.5	20	79	0	53	77	4	8	10	1.10
25290--25315	12	2.2	12	100	0	52	50	0	0	50	1.00
28000--28027	11	2.5	11	100	0	56	67	0	0	32	0.91
29537--29579	22	1.9	23	81	13	54	48	4	9	37	1.56
35617--35692	25	3.1	25	63	21	61	47	2	13	36	1.56
35611--35721	48	2.3	49	92	4	190	49	4	9	36	1.56
35963--36002	20	2.0	20	85	14	55	52	5	2	40	1.37
36021--36073	19	2.8	19	77	5	54	30	3	0	66	1.10
36677--36711	19	1.9	17	88	11	52	51	0	5	42	1.25
37391--37440	13	3.9	13	81	5	57	40	0	14	46	1.44
37803--37840	18	2.2	18	85	4	51	36	5	2	55	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37800--37842	17	2.6	16	79	13	50	39	6	2	51	1.42
45389--45423	13	2.7	13	95	0	61	34	42	8	14	1.76
50277--50363	39	2.2	40	79	6	106	28	16	24	31	1.96
62012--62045	17	2.1	17	88	5	52	61	0	0	38	0.96
62340--62391	24	2.2	24	82	6	61	9	5	15	69	1.35
62349--62402	23	2.3	24	83	3	65	9	7	14	68	1.38
62387--62431	12	3.7	12	81	3	54	13	11	8	66	1.44
62387--62428	13	3.3	13	76	6	50	14	9	7	69	1.37
65369--65434	4	16.2	4	80	9	62	63	1	34	0	1.04
65369--65401	17	1.9	17	100	0	66	69	0	30	0	0.88

Tables:   1

The End!