Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004664.1 Kokia drynarioides strain JFW-HI SEQ_118208, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3807
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32


Found at i:1667 original size:20 final size:20

Alignment explanation


    Indices: 1634--1672  Score: 53
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1624 TATATTGGTT

                                
       1634 GATTTCATTGTACTGTTTAG
          1 GATTTCATTGTACTGTTTAG

                           *    
       1654 GATTT-ATTGATACTTTTTA
          1 GATTTCATTG-TACTGTTTA

       1673 AAATATATTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  19    4  0.24
  20   13  0.76

ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54


Consensus pattern (20 bp):   
GATTTCATTGTACTGTTTAG

Found at i:3009 original size:22 final size:22

Alignment explanation


    Indices: 2949--3015  Score: 89
    Period size: 22  Copynumber: 3.0  Consensus size: 22

       2939 CATAGCAACA

                *           *   * 
       2949 TTAATGTCCCGACATCATGATG
          1 TTAAGGTCCCGACATCGTGACG

                        *    *    
       2971 TTAAGGTCCCGATATCGCGACG
          1 TTAAGGTCCCGACATCGTGACG

                                  
       2993 TTAAGGTCCCGACATCGTGACG
          1 TTAAGGTCCCGACATCGTGACG

             
       3015 T
          1 T

       3016 GACCATTTAT


Statistics
Matches: 38,  Mismatches: 7, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  22   38  1.00

ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27


Consensus pattern (22 bp):   
TTAAGGTCCCGACATCGTGACG
Done.