Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004670.1 Kokia drynarioides strain JFW-HI SEQ_118218, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5168
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33


Found at i:3424 original size:15 final size:15

Alignment explanation


    Indices: 3404--3437  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       3394 GAACAATGTT

                  *        
       3404 AATAAATAATAAACA
          1 AATAAACAATAAACA

                         * 
       3419 AATAAACAATAAATA
          1 AATAAACAATAAACA

                
       3434 AATA
          1 AATA

       3438 CATACACACG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.74, C:0.06, G:0.00, T:0.21


Consensus pattern (15 bp):   
AATAAACAATAAACA
Done.