Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004675.1 Kokia drynarioides strain JFW-HI SEQ_118225, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1848
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25


Found at i:676 original size:25 final size:28

Alignment explanation


    Indices: 621--679  Score: 88
    Period size: 28  Copynumber: 2.2  Consensus size: 28

        611 AAAAAGTGAA

                                        
        621 AAAAAACAAGAAAAAGCAAATAAAAGAG
          1 AAAAAACAAGAAAAAGCAAATAAAAGAG

                  *                     
        649 AAAAAATAAGAAAAA-C-AA-AAAAGAG
          1 AAAAAACAAGAAAAAGCAAATAAAAGAG

                  
        674 AAAAAA
          1 AAAAAA

        680 GGTAAAAGGA


Statistics
Matches: 30,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
  25   13  0.43
  26    2  0.07
  27    1  0.03
  28   14  0.47

ACGTcount: A:0.80, C:0.05, G:0.12, T:0.03


Consensus pattern (28 bp):   
AAAAAACAAGAAAAAGCAAATAAAAGAG
Done.